Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3216 ATGTCATCTAAGAATTCTTTGGATGTGGAATTGTCAAAGAAGACGTCATTTTTGGGTTTGAAAAGATGGGTTTTGATTGGGATAGGGGTTGGTGCATTTATAGTGCTGATTCTTGGTATATTGTCTATATGGGTGATGTTTCGGAGGAAGTCTAGGAGTAGGAGATCTCTGGATAAGTCCCAAATACCAGATGTGTCGAAAGATATCAATGTTGATAAGGTTGCGGTGCAGAGTTCTCATGTTCAACCTGGAAATGTGTTTGCTCCTAATGTTGATAATTCAGATAAGATATCGATTCACATGAGGACGGGCAAATTCAGCGATCCTGATAGCATTAGTCAGTGCAGCTCAGTTTATCATCACGAGAGAGGATTGAGTTCTCTGTCATGGGAAGACGGGAGCTCTGGAAATTTTAAGAAGCAGTCCACATTGTCATATGGAGGAGGGCCAACGACTGCCTCTCCTTTGATTGGATTGCCAGAATTTTCTCATCTTGGGTGGGGCCACTGGTTTACACTTAGAGATCTGGAACAAGCGACTAATCGTTTCTCAACTGAGAACATTCTCGGCGAGGGTGGATATGGAGTTGTTTACAAGGGCAGACTGATCAATGGAACTGAGGTTGCGGTGAAGAAACTTCTTAACAACTTGGGACAAGCAGAGAGAGAGTTCAGGGTTGAAGTGGAGGCTATAGGCCATGTAAGACATAAACATCTTGTGCGCCTACTTGGATACTGCGTAGAAGGAGTTCACAGGCTGCTGGTGTATGAATACGTGAACAATGGTAACTTAGAACAATGGTTGCATGGGGACAAGTACCAACTTGGGACACTTACCTGGGAGGCCCGAATGAAAGTTATACTTGGCACAGCCAAAGCGCTTGCTTACTTACATGAAGCGATAGAACCAAAAGTTATTCACCGAGATATAAAGTCGAGCAACATATTGATCGATACTGAGTTCAATGCAAAGGTTTCTGATTTCGGTTTAGCCAAACTTTTGGAATCAGGAGAAAGTTACATAACTACTAGAGTAATGGGAACATTCGGCTATGTAGCACCAGAATATGCCAACAGTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTCCTGCTGGAAGCGGTTACCGGAAGAGACCCTGTAGACTATGCGCGTCCTTCTAATGAGGTTAATCTTGTTGAATGGCTCAAGATGATGGTGGGGGCAAGGAGGGCCGAGGAAGTTGTGGACTCGAGGCTTGAAGTTAAACCATCTGCACGTGCTTTAAAGCGTTCTCTTCTGGTTGCACTCAGGTGTATTGATCCTGATGCAGAAAAGAGGCCCAAAATGAGTCAAGTTGTTAGGATGCTTGAAGCTGATGAATATCCATTTCGAGAGGATCGAAGGAATAGAAAGAGCTCAACTACCAGCTTGGAAATTGAAACAGTCAAGGATATTTCTGGTCCATCGGATGCTGCAAAGGCGGAGCATTCTAAGAGCAATGTGCCGGAAACAACTCTAAGGATAGATTGA 1524 0.4383 MSSKNSLDVELSKKTSFLGLKRWVLIGIGVGAFIVLILGILSIWVMFRRKSRSRRSLDKSQIPDVSKDINVDKVAVQSSHVQPGNVFAPNVDNSDKISIHMRTGKFSDPDSISQCSSVYHHERGLSSLSWEDGSSGNFKKQSTLSYGGGPTTASPLIGLPEFSHLGWGHWFTLRDLEQATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEREFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGDKYQLGTLTWEARMKVILGTAKALAYLHEAIEPKVIHRDIKSSNILIDTEFNAKVSDFGLAKLLESGESYITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYARPSNEVNLVEWLKMMVGARRAEEVVDSRLEVKPSARALKRSLLVALRCIDPDAEKRPKMSQVVRMLEADEYPFREDRRNRKSSTTSLEIETVKDISGPSDAAKAEHSKSNVPETTLRID* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3216 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Mtr5g3216 507 CDD STKc_IRAK 189 455 - -
Mtr5g3216 507 ProSitePatterns Protein kinases ATP-binding region signature. 189 212 IPR017441 GO:0005524
Mtr5g3216 507 PANTHER OS01G0323000 PROTEIN 2 502 - -
Mtr5g3216 507 SMART serkin_6 183 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3216 507 Gene3D Transferase(Phosphotransferase) domain 1 259 472 - -
Mtr5g3216 507 Pfam Protein kinase domain 184 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3216 507 ProSiteProfiles Protein kinase domain profile. 183 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3216 507 SUPERFAMILY Protein kinase-like (PK-like) 167 458 IPR011009 -
Mtr5g3216 507 Coils Coil 203 223 - -
Mtr5g3216 507 Gene3D Phosphorylase Kinase; domain 1 165 258 - -
Mtr5g3216 507 PANTHER RECEPTOR-LIKE KINASE PLANT 2 502 - -
Mtr5g3216 507 MobiDBLite consensus disorder prediction 462 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3216 Mtr-Chr5 41009902 41014131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3216 129 457 Trihelix Transcription Factor Family AT1G70460 48.955 9.70e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Mtr5g3216 Pkinase 4.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3216 - - gmx:100778444 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3216 5 41009902 41014131 Mtr5g3216 5 41009902 41014131 ECH
Mtr3g1140 3 20421386 20425940 Mtr5g3216 5 41009902 41014131 PCT