Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3155 ATGATTACAACAATCCTCAGACGCGCTTCTTCAACCATCTCACGGCGTACCATCCCCGCCGCCGCCGAGATTCTCTTCTCCACCACCGCCGCCACTGAGCTCCGTCACCTCACAGCAAGATCCTTCCACTCTAAATCACAACCCTTACTATTCCGCGCTTCTTCTGCTTCTCGCGCTGGTTACGCCGCCGAAGCTTTTCCATTCGAAGAGCCTTCAAAATCGAATAGCGATGAGGGTCTTGAGATCGCGAAGCTTGGGATTTCTCAGGATATTGTCTCTGCTTTGGAGAAGAAAGGAATCACCAAGCTTTTCCCCATTCAGAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCCAGAACAGGAACTGGAAAAACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAACATGGGCGAGGAAAGGATCCTCTGGCTTTGGTTTTGGCGCCGACTAGAGAACTTGCGAAGCAGGTTGAGAAAGAATTCTACGAGGCGGCGCCTAATTTGGATACTATCTGTGTTTACGGGGGTACCCCGATCTCTCAACAGATGAGGCAGCTTGATTATGGTGTTGATATAGCGGTTGGTACGCCTGGACGAATTATTGATCTTCTTAATAGAGGTGCTCTAAATTTGAAAGAAGTTCAGTTTGTTATTCTTGACGAAGCCGATCAGATGCTTCAAGTTGGATTCCAGGAAGATGTGGAGAAGATATTGGAGAGATTACCCGCTGAGAGACAAACTCTCATGTTCTCTGCAACAATGCCAACTTGGATAAAGCAGTTAACACGCAATTACCTGAAAAATCCTCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGCTGGCAGATGGAATTTCACTGTACTCGATTCTATCTGATGCGTATGTCAAAGCAGGAATTATTGTTCCTCTAATTAAAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACCCAAACAAAACGTGACGCTGATCGAATATCACATGGCATGTCAAAAAGTATTCCATGTGAGGCATTGCATGGAGATATATCACAAATCCAGAGAGAAAGGACGCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTCGATATACCTAATGTTGATCTTGTTATTCATTATGAACTTCCCAATAATTCAGAGATATTTGTTCACCGATCTGGACGAACTGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTTTATACACAAGATCAATCCAGGACTCTTAGGACTATTGAGCGCGATGTAGGCTGTAAATTTTCAGAGTTACCAAAGATTGCCGTTGATACTGCATCACTGGGCGGATTTAGTGGTGGCGGCAGATTTGGTGGTGGTGGTGGATTTGGTGGTGGCGGTGGTGGCCGATCTGGTTCTTTTGGTGGTGGCCGTTCTGGAGGCTACAGTAATTCAGGCGGGTTTTCTGGTTCAAGACAATCTGGAGGGGGTTTTTCTGGTGGATCAAGCTCATATGGTGAAAATAGATATGGCGGATCAAGCTCTGGTCGTTTCGGCTCCTTCGGTTCAGGTGATTCAGGCAGTAGATCTGGTGGATCCTCTGGTGGATTCAGCAAACAAGGTGGTTTTGGTGGATTCGGTGGTGGTTCAGATCGCTCTGGTGGATTTGGTGGTGGTTTTGGAGATTTTGGGTCGGGTAAACCTGGCGCATTTGGTGATCGTCGTGGCAGAGATTAG 1773 0.4602 MITTILRRASSTISRRTIPAAAEILFSTTAATELRHLTARSFHSKSQPLLFRASSASRAGYAAEAFPFEEPSKSNSDEGLEIAKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGKDPLALVLAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAERQTLMFSATMPTWIKQLTRNYLKNPLTIDLVGDSDQKLADGISLYSILSDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDADRISHGMSKSIPCEALHGDISQIQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILVYTQDQSRTLRTIERDVGCKFSELPKIAVDTASLGGFSGGGRFGGGGGFGGGGGGRSGSFGGGRSGGYSNSGGFSGSRQSGGGFSGGSSSYGENRYGGSSSGRFGSFGSGDSGSRSGGSSGGFSKQGGFGGFGGGSDRSGGFGGGFGDFGSGKPGAFGDRRGRD* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3155 590 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 33 514 - -
Mtr5g3155 590 Gene3D - 81 289 IPR027417 -
Mtr5g3155 590 SMART ultradead3 99 302 IPR014001 -
Mtr5g3155 590 CDD DEADc 91 286 - -
Mtr5g3155 590 Pfam DEAD/DEAH box helicase 104 273 IPR011545 GO:0003676|GO:0005524
Mtr5g3155 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 285 IPR014001 -
Mtr5g3155 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Mtr5g3155 590 SMART helicmild6 339 419 IPR001650 -
Mtr5g3155 590 MobiDBLite consensus disorder prediction 520 590 - -
Mtr5g3155 590 Pfam Helicase conserved C-terminal domain 314 419 IPR001650 -
Mtr5g3155 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 440 IPR027417 -
Mtr5g3155 590 MobiDBLite consensus disorder prediction 496 515 - -
Mtr5g3155 590 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 33 514 - -
Mtr5g3155 590 MobiDBLite consensus disorder prediction 520 549 - -
Mtr5g3155 590 Gene3D - 308 458 IPR027417 -
Mtr5g3155 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 458 IPR001650 -
Mtr5g3155 590 CDD SF2_C_DEAD 311 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3155 Mtr-Chr5 40430808 40435914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3155 70 456 Eukaryotic Initiation Factors Gene Family AT3G19760 32.419 4.67e-67 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3155 - - gmx:100778436 741.88