Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3153 ATGGCTTTCTTTAGGAACTTTGTAAATGATACAGTCTCACATGGTGCCATGGAAGATAAAGGCCTAGGGCAGGATGCTAATAATATTCATAGATCAGTAGGTAATGAATATACTGATGGAACTTCTAGCGAGAAAGAATTCGACATGAACTTGGAGGCACAATATGAGAGTGATGGTGGGCCAGATGATGCATGTAGACTGCAAAATGAGGGAACAGCTGACGATAGAGATGGTTTGAGAGAATCCAACTTACAGGCTTCTGGTAGTAAAGCATCTACAGTTGGAAGGTGGGGTTCGACATTTTGGAAGGACTGCCAACCATCGTGTCCTCAAAATGGTTTTGAATCCGGGAAGGAATCCAAAAGTGGATCAGACTATAAAAATGCAGGGGGATCTGAAGATAATTCTGTGGATGGAGAAACAGGCAGGCTAGACTCGGAAGATGATGATGGACAAAAGGAGGTAGGTAAAGGCCGGAGAAGCCACTCTGATGTTCCTGCAGAAGAAATGTTGTCCGATGAATATTATGAGCAGGATGGGGAAGATCAAAGTGACTCATTGCATTATAATGGGATTCAAAAGTCCACTGGACGGAATTCATGGCCTCAACAGAAATCTACTTCTGTGAAAAAACCTGTGCGTAGGAAATCTAGGATTTCAGATGATGATGGTGATGGTGATGTTGATTATGAAGAGGAGGATGAAGTAGACGAAGATGATCCCGATGATGCAGATTTTGAGCCTGTTGAGAGTAGCCATACCTTAAAAAAGGATAAAGATTGGGAAGGTGAAGGATCGGATGAAAATGATGACAGTGATGAAAGCCTAGATGTTTCTGATGATGACGAATCTTTCTATACTAAGAAAGGCAAGGGAAGGCAACAAGGTAAGGTTAGAAAAAATATAAAATCTACCAGAGATCGCAAAGCATGTGTTGCATCTAGCAGACAAAGAAGATTAAAATCATCTTTTGAAGACAACGAGTCTACAACAGAGGATTCTGACAGTGTTAGTGATGACGATTTTAAAAGCACAAGAAAGAGAAGTTTCAATGTTCGGAAGAATAACAGCCGCTTTTCTGTAACCACAAGTTTTTCTGCGCACAACAGTGACGTTCGCACTTCTAGTAGGGCTGTTAGGAAGATATCATATGTTGAAAGTGACGGAAGTGAAGAAGCTGATGACGGGAAGAAGAAAAAGTCTCAAAAGGAAGAAATTGAAGAGGATGATGGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGCACAGCTGAAGACGCTCAAAGCAATAATAGATCGACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAGATTGAATTTTTGATAAAATGGAAGGGGCAATCTCATTTGCACTGTCAATGGAAGTCTTTCGCAGAGCTACAAAATCTCAGTGGCTTTAAGAAGGTTTTAAATTATACGAAGAAAATAATGGAGGACATCAGGTACCGGAGAGCAATCTCAAGAGAGGAGATTGAGGTCTATGATGTGAGCAAGGAGATGGATTTAGAAATTATCAGGCAGAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATAAGTAAAGATAATTCTGGCAATGTTGTCCCAGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGACATTGATATCGCTTTTGCTCAACATTCGATCGATGAGTATAAGGCTCGAGAGGTTGCAATGTCAGTTCAAGGAAAGGTGGTAGATTCCCAGCGCAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAGCCTGAGTGGTTGATGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTTCAATCAGTATCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGCCCTTTTCTTGTAGTTGTGCCATTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAGTTTTATAATGACAAAAAGCCTGGTAAACCAATTAAATTCAATGCACTGTTGACTACATATGAAGTAATTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTAGACGAGGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTATACATCACTTTTAGAATTTAGCACCAAGAATAAGTTGCTCATCACCGGTACTCCTTTACAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTACCAAATTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAGAATTTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGACCACACATACTTCGAAGAGTTATCAAAGATGTAGAGAAATCTTTACCCCCCAAAATTGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAACTTCCAAAATTTAAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTAGAACTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGAGGTAGTGACAACAGTAAACTCGAGAGAATTGTCTTTAGCAGTGGGAAGCTTGTGATACTTGATAAGCTTCTTGTTAGATTGCACGAAACCAAGCACCGCGTTCTGATTTTCTCCCAGATGGTTAGGATGTTGGATATATTGGCACAATATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTCGATGGGAGCACAAAATCTGAGCTGCGACAGCAGGCAATGGAGCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTCTAGGTATCAACCTTGCCACGGCAGACACTGTCATTATATTTGATTCAGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGATGTTGTCAACATATATAGATTTGTGACAAGCAAAAGTGTTGAAGAAGATATTCTGGAGCGTGCTAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTGAATGCAGAAGGTAGACTGGAGAAGAAAGAAGTCAAAAAAGGAGGAAGTTACTTTGATAAAAACGAGCTGTCTGCAATCTTACGATTTGGAGCGGAAGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAGGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGACAGATGAAGATGAACAAGGGAATGAGTTATTAAGTGCATTTAAGGTTGCTAATTTTTGCAATGATGAAGATGATGCAAGTTTCTGGAGTCGTTGGATAAAGCCCGATGCTGCATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTATGCCGAGGCTGATCCATCTGAAAGGAGTACTAAAAGGAAAAAGAAGGAACCTGAGCCACCTGAACGAGTTCAGAAACGCCGCAGAGCAGAGCATTCGGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTTCAAGTGAGAAGTTGGTCATATGGGAATTTATCAAAAAGAGACGCACTCCGATTTTCTCGTGCAGTTATGAAATACGGGAATGAGAACCAAATCGACTTAATTGCTGCTGACGTTGGTGGTGCAGTTGCCGCGGCTCCACCTGAAGCACAGATTGAACTTTTCAATGCTCTAATTGATGGTTGTTCAGAAGCTGTGGAAATTGGAAATCTGGATACAAAGGGACCTGTGCTAGATTTTTTTGGTGTCCCTGTGAAAGCAAATGATCTAGTTACCCGTGTCCAAGAGCTTCAACTCCTAGCAAAGCGCATTAGCCGGTATGAAGATCCCCTTGCACAGTTCCGTGTTTTATCGTATCTCAAGCCTTCAAACTGGTCGAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGAAAGGCTTGGCCTCATGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTACTAATGCCCTTCTGGAACAAGAACTTGTTGTTCTTGGGGTAAAAAATGCAAATAGCAGAGTTGCACGGAAGCCTTCCAAGAAAGAGAAAGAACATATGATGAATATCTCATTGTTGCATGGACAGGAGAAGAAAAAAAAATTGGGTTCTGTTAATGTCCAAATGAGAAAGGATAGGTTTCAGAAACCCCGAAAGGTTGAGCCTATTGTAAAAGAGGAAGGTGAAATGTCCGACAATGAGGAAGTATATGAGCAGTTTAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGATTGCAGACAACTAGTGCTAATCTTCCAAAAGAAAAGGTTCTTTCAAAAATACGCAACTATTTACAACTTCTTGGACGAAGAATTGATCAAATTGTGTCGGAAAATGAAGTGGAACCGTATAAGCAAGATAGAATGACTGTACGACTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGGCTCCATCAAATATATTCCAAACTTAAACAGGAACAAGAAGATGATAGTGGGGTTGGTCCCTCTGCCTCATTTAGCAGAAATGGAAACCCGTTCCATCGCCACATGGAGAGGCAAAGAGGATTTAAAAATATGGCTAACTACCAAATGTCAGAACCTGATAATAATACAGGAAAATCTGAGGCGTGGAAACGAAGAAGAAGAGCTGAAAGTGAGGATCATTTCCAGGGTCAGCCGCCACCTCAAAGAACCTCTAGTAATGGAATCCGGATTACCGATCCTAATTCACTTGGGATCCTTGGTGCTGGACCATCTGACAAACGGTTGGTCAGCGAGAAACCTTTTAGGACACAACCTGGTGGGTTTCCTTCAAGTCAAGGTTTTTCTTAA 5220 0.4096 MAFFRNFVNDTVSHGAMEDKGLGQDANNIHRSVGNEYTDGTSSEKEFDMNLEAQYESDGGPDDACRLQNEGTADDRDGLRESNLQASGSKASTVGRWGSTFWKDCQPSCPQNGFESGKESKSGSDYKNAGGSEDNSVDGETGRLDSEDDDGQKEVGKGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIQKSTGRNSWPQQKSTSVKKPVRRKSRISDDDGDGDVDYEEEDEVDEDDPDDADFEPVESSHTLKKDKDWEGEGSDENDDSDESLDVSDDDESFYTKKGKGRQQGKVRKNIKSTRDRKACVASSRQRRLKSSFEDNESTTEDSDSVSDDDFKSTRKRSFNVRKNNSRFSVTTSFSAHNSDVRTSSRAVRKISYVESDGSEEADDGKKKKSQKEEIEEDDGDSIEKVLWHQLKGTAEDAQSNNRSTEPVLMSHLFDSEFDWNEIEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRRAISREEIEVYDVSKEMDLEIIRQNSQVERIIADRISKDNSGNVVPEYLVKWQGLSYAEVTWEKDIDIAFAQHSIDEYKAREVAMSVQGKVVDSQRKKSKASLRKLEEQPEWLMGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPTKFKSKDEFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEVKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLGMNIDEILERAEKVEEKTDEDEQGNELLSAFKVANFCNDEDDASFWSRWIKPDAAFQAEEALAPRSARNIKSYAEADPSERSTKRKKKEPEPPERVQKRRRAEHSAPAVPMVDGASVQVRSWSYGNLSKRDALRFSRAVMKYGNENQIDLIAADVGGAVAAAPPEAQIELFNALIDGCSEAVEIGNLDTKGPVLDFFGVPVKANDLVTRVQELQLLAKRISRYEDPLAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLMKKIAPVELQNHETFLPRAPNLRDRTNALLEQELVVLGVKNANSRVARKPSKKEKEHMMNISLLHGQEKKKKLGSVNVQMRKDRFQKPRKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVSENEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQEDDSGVGPSASFSRNGNPFHRHMERQRGFKNMANYQMSEPDNNTGKSEAWKRRRRAESEDHFQGQPPPQRTSSNGIRITDPNSLGILGAGPSDKRLVSEKPFRTQPGGFPSSQGFS* 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3153 1739 Gene3D - 608 847 IPR038718 -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 384 411 - -
Mtr5g3153 1739 Pfam Domain of unknown function (DUF4208) 1526 1618 IPR025260 -
Mtr5g3153 1739 Pfam Helicase conserved C-terminal domain 934 1047 IPR001650 -
Mtr5g3153 1739 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1678 - -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 15 95 - -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 224 246 - -
Mtr5g3153 1739 SMART chromo_7 523 582 IPR000953 -
Mtr5g3153 1739 SMART chromo_7 410 493 IPR000953 -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 247 263 - -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 1687 1703 - -
Mtr5g3153 1739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1123 IPR027417 -
Mtr5g3153 1739 CDD CD1_tandem 410 490 - -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 1668 1684 - -
Mtr5g3153 1739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 937 1088 IPR001650 -
Mtr5g3153 1739 SUPERFAMILY Chromo domain-like 409 492 IPR016197 -
Mtr5g3153 1739 CDD CD2_tandem 523 579 - -
Mtr5g3153 1739 Gene3D - 527 579 - -
Mtr5g3153 1739 ProSiteProfiles Chromo and chromo shadow domain profile. 525 589 IPR000953 -
Mtr5g3153 1739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 838 IPR027417 -
Mtr5g3153 1739 SMART helicmild6 963 1047 IPR001650 -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 1208 1240 - -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 185 208 - -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 1657 1739 - -
Mtr5g3153 1739 SUPERFAMILY Chromo domain-like 504 580 IPR016197 -
Mtr5g3153 1739 Pfam SNF2-related domain 636 905 IPR000330 GO:0005524|GO:0140658
Mtr5g3153 1739 Gene3D - 848 1078 IPR027417 -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 305 328 - -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 108 135 - -
Mtr5g3153 1739 Pfam Chromo (CHRromatin Organisation MOdifier) domain 526 580 IPR023780 -
Mtr5g3153 1739 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1678 - -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 1201 1242 - -
Mtr5g3153 1739 CDD SF2_C_SNF 923 1058 - -
Mtr5g3153 1739 Gene3D - 1344 1449 - -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 108 347 - -
Mtr5g3153 1739 SMART ultradead3 613 809 IPR014001 -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 138 169 - -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 264 280 - -
Mtr5g3153 1739 Gene3D - 399 525 - -
Mtr5g3153 1739 ProSiteProfiles Chromo and chromo shadow domain profile. 412 500 IPR000953 -
Mtr5g3153 1739 SMART DUF4208_2 1514 1619 IPR025260 -
Mtr5g3153 1739 MobiDBLite consensus disorder prediction 1620 1643 - -
Mtr5g3153 1739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 629 801 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3153 Mtr-Chr5 40380400 40404579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3153 639 1074 RAD5 or RAD16-like Gene Family AT1G02670 25.992 6.72e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr5g3153 SNF2_N 5e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3153 K11367 - gmx:100792398 2905.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3153 5 40380400 40404579 Mtr5g3153 5 40380400 40404579 ECH