Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3151 ATGAGCAAAAAACTCATGAATTTAGATAGTTCCAACAATAATGCAGATTGGGCTCAACAAGACTCTCTGAATCGTGTCCAACTGGGGATGTTCAAGACTGGCACATGCCCTTATGGAGACCACTGTCAATTTGCTCACGGCATTGGAGAGCTTCGCCAAATGATCCGCCATCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCGTGTGGCCATAGATGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTATGTTTTTGTTGAAATGTTCATTTACAGTATAG 309 0.4531 MSKKLMNLDSSNNNADWAQQDSLNRVQLGMFKTGTCPYGDHCQFAHGIGELRQMIRHPRYKTEVCRMVLAGVVCPCGHRCHFRHALTEQEKAMFLLKCSFTV* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3151 102 SMART c3hfinal6 59 86 IPR000571 GO:0046872
Mtr5g3151 102 SMART c3hfinal6 23 48 IPR000571 GO:0046872
Mtr5g3151 102 SUPERFAMILY CCCH zinc finger 55 90 IPR036855 GO:0046872
Mtr5g3151 102 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 47 IPR000571 GO:0046872
Mtr5g3151 102 ProSiteProfiles Zinc finger C3H1-type profile. 59 87 IPR000571 GO:0046872
Mtr5g3151 102 SUPERFAMILY CCCH zinc finger 30 53 IPR036855 GO:0046872
Mtr5g3151 102 PANTHER CCCH ZINC FINGER/TIS11-RELATED 30 93 IPR045877 GO:0003729
Mtr5g3151 102 Gene3D - 29 53 - -
Mtr5g3151 102 Gene3D - 54 92 - -
Mtr5g3151 102 ProSiteProfiles Zinc finger C3H1-type profile. 31 49 IPR000571 GO:0046872
Mtr5g3151 102 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 30 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3151 Mtr-Chr5 40354121 40355549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3151 32 102 C3H Transcription Factor Family AT1G68200 74.324 3.73e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr5g3151 zf-CCCH 5.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3151 K18753 - mtr:MTR_5g090040 180.259