Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3145 ATGGAAGAATCAAGTGAGTTGCAACCAGAAGAAAATAAAGTCTCCGCGGAGAAGTTTCCGAAAAGAAAGCTCAAAACGCCTGCACAGCTTAAGGGCTTGGAGAAATTTTATACGGAGCACAAATATCCGACAGAGGAATTGAAATTAGCAATTGCTGAGGAGTTAGAGTTGACAGAAAAGCAAGTTTCTGGATGGTTTTGCCACCGAAGGTTAAAGGATAAAAGATTGTTGAAAGAAGAAGCAAATGCTAATGGACGACAAGATCGTTCAAGCGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCGTGTGGAAGCAGTAAACATGGTGATTACAAGTATCTGGATCCCAAAGAGGTTGAGAGCAATGGCCTCTACAATCGTGATTTGTCTGTTGCAGATATGACGTACGGACGCAGGAATCATTTTTCTGAAAATGTCAGTGGAATGGATGATGACACGTCATCTGAGAGTAGCTCTTATTTGCAAGAACGTATGTATCCTCAAGGACAAGATCCATATGAGATGGAGCCTTCTAGATATAGTAAAGCTCTTCCACCCTTAAATCCGAAAGGTGCAATCAACATGGGATATAAACCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGAATTATCAGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAATGCCAAACTGAAGAAGCAGTTCATGAACCGTACCATATTGCTGATCCTGCTCTTCTGAATTCTCCAGAAATCTCCACAGTGAAAAGTCGACCTGGTCTTAGCTCTAGATATGATTCATATTATACTAAACATGGTTCCCAAGATACTCATATGGAAGGAGTTGACTTTGGTTCGTTGCATGATGTTCATGTTCAGGATAAACAAGATAAGAAAGCTTTGCATGGTACCAAACATAGACAAACTTTTCAGAGTAATGCCGGTCGTTTTCCTGGCAGGAACTCTTCCTTAGATTTGTACGAAGACTCTACTGGAGAAGCTGCTTATAACATCACTAAGAATCATAGGAAGGATGCCAAGCGCGGTGTTGAGGGTATAAGATCTGATTCTACTTCTAACCATAGTGATCGCTATGAAGAAAACCTCCCAGTCAAACATTCAGACTTCCTACAATATAACTATGAAAACACCAATCAAAAGAATGTGCAAAGGAGTGTTCATGCAGACATTCTTCAATATGACTATGATAATGTCAATCCAAAGAAAGCGCCAAGGAGTGAACACATAAAGTCTAAACCTTCAAACTCAATCCACAATTCTCGAGGTTCTGTGGATACTGAAGAAAGAGGGCTATCTTCTAGGATGACTAAGGATGAGTTGTTTAAGGGGGACAGGAAGTCAAAAAAGCAATATCGCGATGCAGGTGGAGCAGGGATGCTTTCAAATGAGACTATGGTTGCAAAACGACTTAAAGCAAATACCTTTCAACCATACAATATGAAACAGGTTCCTGTTGCTGAGATAGAACCAAGGAAAACTCAGAGATCTGCTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACTGCTGATACCAGTTCCTCATTGGATTGA 1635 0.4128 MEESSELQPEENKVSAEKFPKRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEANANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESNGLYNRDLSVADMTYGRRNHFSENVSGMDDDTSSESSSYLQERMYPQGQDPYEMEPSRYSKALPPLNPKGAINMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYQEDGPLLGVEFDPLPPGAFECQTEEAVHEPYHIADPALLNSPEISTVKSRPGLSSRYDSYYTKHGSQDTHMEGVDFGSLHDVHVQDKQDKKALHGTKHRQTFQSNAGRFPGRNSSLDLYEDSTGEAAYNITKNHRKDAKRGVEGIRSDSTSNHSDRYEENLPVKHSDFLQYNYENTNQKNVQRSVHADILQYDYDNVNPKKAPRSEHIKSKPSNSIHNSRGSVDTEERGLSSRMTKDELFKGDRKSKKQYRDAGGAGMLSNETMVAKRLKANTFQPYNMKQVPVAEIEPRKTQRSAAEMPSSFSEDETADTSSSLD* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3145 544 SMART HOX_1 18 80 IPR001356 GO:0003677
Mtr5g3145 544 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 544 - -
Mtr5g3145 544 MobiDBLite consensus disorder prediction 512 544 - -
Mtr5g3145 544 MobiDBLite consensus disorder prediction 449 479 - -
Mtr5g3145 544 MobiDBLite consensus disorder prediction 150 165 - -
Mtr5g3145 544 MobiDBLite consensus disorder prediction 427 441 - -
Mtr5g3145 544 MobiDBLite consensus disorder prediction 80 114 - -
Mtr5g3145 544 CDD homeodomain 21 75 IPR001356 GO:0003677
Mtr5g3145 544 MobiDBLite consensus disorder prediction 86 106 - -
Mtr5g3145 544 MobiDBLite consensus disorder prediction 1 24 - -
Mtr5g3145 544 MobiDBLite consensus disorder prediction 145 165 - -
Mtr5g3145 544 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 544 - -
Mtr5g3145 544 MobiDBLite consensus disorder prediction 424 489 - -
Mtr5g3145 544 Gene3D - 10 92 - -
Mtr5g3145 544 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Mtr5g3145 544 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Mtr5g3145 544 MobiDBLite consensus disorder prediction 523 544 - -
Mtr5g3145 544 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Mtr5g3145 544 MobiDBLite consensus disorder prediction 7 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3145 Mtr-Chr5 40273696 40279129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3145 3 544 Homeobox Transcription Factor Family AT4G03250 39.254 3.78e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mtr5g3145 Homeodomain 5.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3145 - - gmx:100805913 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3145 5 40273696 40279129 Mtr5g3145 5 40273696 40279129 ECH
Mtr3g1057 3 17757207 17763358 Mtr5g3145 5 40273696 40279129 PCT