Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3142 ATGGGTATGTTTGTTGTAGCACCTTCTTCTTTTCATCATCACCACCATAATAACAACCACCATGAAGCTCTCATGTCTGATCCTCACTCTCTTAACCCCGCCACCGCTCTCGGTGTTGGGGTTATACCTTTACTCACAGCTTCTCCATGTCTTGAAAATGAAAACATGTTAAACAGTAGAAGAAACCAACAAGGAATTCAGTTTTGGCATGAACAACATCATCAACAACAGCAACAACAAAGTCCACATTCACACTATTTGAAAAAACAACAAGGTTTTCTTGATCATCATAATACAAGTCCAACAAATTTGGTTCATGGTGGTGGGTTAACTGCTTCTGGTACCAGTAGTGGTGGAGGAACAACAACGTGTCAAGATTGTGGAAACCAAGCAAAGAAAGATTGTAGTAATAGAAGGTGTAGAACTTGTTGTAAAAGTAGAGGTTTTGATTGCCCTACTCATGTTAAGAGTACTTGGGTACCTGCTGCTAGAAGAAGGGAACGTCTTTCTTCTACCGCGACAACGACGGTGGTTGCTGGTGGTGGTTCTAGTGGTTCAACTTCTGGTGCTAAGAAACCTAGACTTATTGCTTCACAAACTACTTCTCATACTTCTACTTCTAATACTACCCCTCCTCGAAGCTTTGATACTACCTCTAGCCATCAAGGTTTCAAAGATTCAATGCCGGGTCAAGTACGTGCACCGGCGGTATTCAAGTGTGTTAGAGTGACATCAGTGGATGATGGAAAAGATGAGTATGCATATCAAGCTGTAGTGAAGATTGGTGGCCATGTTTTCAAAGGTTTTCTTTATGATCATGGTGTTGAGAATAGGGAAGTTTATCCTAACCTTTCTGAGCTTCATTTAGGTGGTGGTGGTGGAAATAATAATGGTGGTGCTAATAGAAATGGAGTGTCTTCTTCATCACCAATGATGGATCCTTCTCATGATGTTTATGCAGCAGCTTCAAGTGGTGGTGGAGGATTACTTGGAGGTTCAGCTTATGGTAATCAAATAAATTGA 1023 0.4115 MGMFVVAPSSFHHHHHNNNHHEALMSDPHSLNPATALGVGVIPLLTASPCLENENMLNSRRNQQGIQFWHEQHHQQQQQQSPHSHYLKKQQGFLDHHNTSPTNLVHGGGLTASGTSSGGGTTTCQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLSSTATTTVVAGGGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSFDTTSSHQGFKDSMPGQVRAPAVFKCVRVTSVDDGKDEYAYQAVVKIGGHVFKGFLYDHGVENREVYPNLSELHLGGGGGNNNGGANRNGVSSSSPMMDPSHDVYAAASSGGGGLLGGSAYGNQIN* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3142 340 MobiDBLite consensus disorder prediction 168 228 - -
Mtr5g3142 340 MobiDBLite consensus disorder prediction 94 122 - -
Mtr5g3142 340 Pfam Domain of unknown function (DUF702) 121 276 - -
Mtr5g3142 340 MobiDBLite consensus disorder prediction 168 226 - -
Mtr5g3142 340 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 340 - -
Mtr5g3142 340 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 340 IPR007818 GO:0003700|GO:0006355
Mtr5g3142 340 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 228 275 IPR006511 -
Mtr5g3142 340 MobiDBLite consensus disorder prediction 296 313 - -
Mtr5g3142 340 MobiDBLite consensus disorder prediction 292 318 - -
Mtr5g3142 340 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 123 165 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3142 Mtr-Chr5 40201546 40204386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3142 3 319 C2H2 Transcription Factor Family AT5G12330 49.699 4.97e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mtr5g3142 DUF702 2.1e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3142 - - gmx:100817745 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3142 5 40201546 40204386 Mtr5g3142 5 40201546 40204386 ECH