Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3140 ATGGCAGAGAAAGAATTTGCACCCTTTTCTCAATCCTCAAACTCTAAGAATTTAGAATTCTTAGAGAACAAATCTGAGAGATTTTATGCACCCTCAGGCAGTTCCTCTGCCATAGTGGGAGAAATAATAGGGCACTCAACCTCTCTCCCCAACACTACAACAACAAACAATAACAATGAACAGTTGGTTATGCCAACATCACCACCAAGAGCACCCTCCTCTAAGAGATCTCGTGGCAGACCAAAGGGCTCCAAAAACAAGCCCAAGACACCTGCGGTGGTTATGGTAGAGCCTCAAACATTAATGAAACAAATATTTATTGAAATCCCTGCTGGGTATGATGTTTTGGAGTCCATCATCAAGATGGCTTGGCGTCATGAAGCTGACATCACAGTGCTGAGAGGTTTTGGTATTGTCTCTGACATCACCATTCACAGCTCGTTATCTCATACCCCACCACTCACTATTGAAGGACCTGTCCAAATGACGTCTCTCTCTGGCACTTATGTCAATCCCAATGTTGATAATGTTCCTTCTGAAGTCATTGCCAACCCTGCATGTTCTTCTTTTAGCATTTTCCTCTCTGGTAGTCATGGTCAAGTGTATGGTGGAATTGTTGTAGGGAAGGTCATGACTTCAAGTGTTGTTATGATTAGCGCCACTCTTATGAAGAAAACCAAGTTTTATATGGTGGCGTAG 699 0.4292 MAEKEFAPFSQSSNSKNLEFLENKSERFYAPSGSSSAIVGEIIGHSTSLPNTTTTNNNNEQLVMPTSPPRAPSSKRSRGRPKGSKNKPKTPAVVMVEPQTLMKQIFIEIPAGYDVLESIIKMAWRHEADITVLRGFGIVSDITIHSSLSHTPPLTIEGPVQMTSLSGTYVNPNVDNVPSEVIANPACSSFSIFLSGSHGQVYGGIVVGKVMTSSVVMISATLMKKTKFYMVA* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3140 232 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 47 231 - -
Mtr5g3140 232 CDD DUF296 105 218 IPR005175 -
Mtr5g3140 232 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 223 - -
Mtr5g3140 232 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 221 IPR005175 -
Mtr5g3140 232 MobiDBLite consensus disorder prediction 46 73 - -
Mtr5g3140 232 MobiDBLite consensus disorder prediction 46 91 - -
Mtr5g3140 232 ProSiteProfiles PPC domain profile profile. 99 232 IPR005175 -
Mtr5g3140 232 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 47 231 IPR014476 GO:0003680
Mtr5g3140 232 Gene3D - 102 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3140 Mtr-Chr5 40174512 40175269 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3140 75 231 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 31.056 2.77e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3140 - - mtr:MTR_5g089600 245.743