Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3127 ATGGGCAATTGTTGCTCTGGTGGTACTGAAGACCCTGAAGATAAGGGAGAAAACAATCAACAAAACAACGATGCAAATGGAGATTCTTCAGCTACAACGCCGCCACCATGGTCAAAACCTTCGCCTCAACCTTCTAAACCATCAAAACCTTCCGCGATCGGTCCTGTTCTTGGCAGGCCAATGGAAGATGTTAAGGCTACTTATAGCATGGGGAAGGAACTAGGGAGAGGACAATTTGGTGTAACACATTTGTGCACACACAAAACCACTGGAAAACAATATGCATGCAAAACAATAGCCAAGAGAAAGCTTGCGAATAAGGAAGATATTGAGGATGTTAGGAGGGAGGTTCAAATCATGCATCACCTTACAGGACAGCCTAATATTGTGGAACTTATTGGTGCTTTTGAAGATAAACAATCTGTTCATTTGGTTATGGAGTTGTGTGCTGGTGGTGAACTTTTCGATCGAATCATTGCTAAGGGTCATTACACCGAACGTGCTGCAGCTTCCTTGTTGAGAACCATTGTTCAAATTGTTCATACTTGTCATTCCATGGGTGTTATTCATAGAGATCTTAAGCCTGAGAATTTTCTTTTGTTGAGCAAGGATGAGAATTCTCCTCTCAAAGCCACTGATTTCGGTTTATCTGTCTTTTACAAACAAGGTGACCAGTTTAAAGATATTGTTGGTAGTGCATATTACATTGCACCTGATGTGTTGAAGAGGAAATATGGACCAGAAGTAGACATTTGGAGTGTTGGTGTCATGTTATATATTCTTCTATGTGGTGTTCCACCATTTTGGGCAGAATCTGAAAATGGTATATTCAATGCCATCCTAAGAGGACATGTTGACTTTTCTAGTGATCCATGGCCCTCCATTTCACCTTCAGCAAAGGATCTTGTAAGGAAAATGTTGAATTCAGATCCCAAGCAAAGGATTACAGCATATGAAGTTCTGAATCATCCATGGATCAAGGAAGACGGAGAAGCACCAGATACACCTCTTGACAATGCAGTGCTCAATAGGCTCAAACAGTTTAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAAGGTTATTGCTAGCTGCTTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTTAAGGGTATGGACACTGACAATAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTTGCAAAACAAGGAACTAGACTGAGTGAAACAGAAGTTAAGCAATTAATGGAAGCTGCAGATGCTGATGGTAATGGAATCATTGACTACGACGAGTTCATCACAGCAACTATGCACATGAACCGATTGAACAGAGAAGAACATGTTTATACTGCCTTCCAATTCTTCGATAAAGATAACAGCGGGTACATCACCATTGAAGAACTAGAGCAAGCTCTCCATGAGTATAACATGCATGACGGCAGGGACATAAAAGAAATCATTTCAGAAGTTGATGCAGATAACGATGGTCGGATTAACTACGATGAATTTGTTGCAATGATGGGCAAAGGAAACCCAGAAGCAAATACCAAGAAGAGGCGTGATTCGACCTTGTATTAG 1572 0.4097 MGNCCSGGTEDPEDKGENNQQNNDANGDSSATTPPPWSKPSPQPSKPSKPSAIGPVLGRPMEDVKATYSMGKELGRGQFGVTHLCTHKTTGKQYACKTIAKRKLANKEDIEDVRREVQIMHHLTGQPNIVELIGAFEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLSKDENSPLKATDFGLSVFYKQGDQFKDIVGSAYYIAPDVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESENGIFNAILRGHVDFSSDPWPSISPSAKDLVRKMLNSDPKQRITAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKVALKVIASCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTRLSETEVKQLMEAADADGNGIIDYDEFITATMHMNRLNREEHVYTAFQFFDKDNSGYITIEELEQALHEYNMHDGRDIKEIISEVDADNDGRINYDEFVAMMGKGNPEANTKKRRDSTLY* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3127 523 ProSiteProfiles Protein kinase domain profile. 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3127 523 Gene3D Transferase(Phosphotransferase) domain 1 154 334 - -
Mtr5g3127 523 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 16 514 - -
Mtr5g3127 523 ProSiteProfiles EF-hand calcium-binding domain profile. 480 511 IPR002048 GO:0005509
Mtr5g3127 523 CDD STKc_CAMK 68 325 - -
Mtr5g3127 523 Pfam EF-hand domain pair 374 434 IPR002048 GO:0005509
Mtr5g3127 523 Pfam EF-hand domain pair 444 505 IPR002048 GO:0005509
Mtr5g3127 523 Pfam Protein kinase domain 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3127 523 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Mtr5g3127 523 SUPERFAMILY EF-hand 366 505 IPR011992 -
Mtr5g3127 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Mtr5g3127 523 Gene3D - 367 435 - -
Mtr5g3127 523 SUPERFAMILY Protein kinase-like (PK-like) 44 354 IPR011009 -
Mtr5g3127 523 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Mtr5g3127 523 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Mtr5g3127 523 Gene3D Phosphorylase Kinase; domain 1 70 153 - -
Mtr5g3127 523 MobiDBLite consensus disorder prediction 1 58 - -
Mtr5g3127 523 MobiDBLite consensus disorder prediction 19 34 - -
Mtr5g3127 523 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Mtr5g3127 523 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Mtr5g3127 523 SMART serkin_6 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3127 523 ProSitePatterns Protein kinases ATP-binding region signature. 74 101 IPR017441 GO:0005524
Mtr5g3127 523 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Mtr5g3127 523 SMART efh_1 409 437 IPR002048 GO:0005509
Mtr5g3127 523 SMART efh_1 373 401 IPR002048 GO:0005509
Mtr5g3127 523 SMART efh_1 445 473 IPR002048 GO:0005509
Mtr5g3127 523 SMART efh_1 480 508 IPR002048 GO:0005509
Mtr5g3127 523 Gene3D - 344 505 - -
Mtr5g3127 523 MobiDBLite consensus disorder prediction 35 49 - -
Mtr5g3127 523 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Mtr5g3127 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3127 Mtr-Chr5 39991750 39995075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3127 1 522 EF-hand Containing Proteins AT5G12180 81.509 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mtr5g3127 Pkinase 1.9e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3127 K13412 - gmx:100819061 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3127 5 39991750 39995075 Mtr5g3127 5 39991750 39995075 ECH
Mtr3g1286 3 23721265 23726636 Mtr5g3127 5 39991750 39995075 PCT