Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3118 ATGGCTTTCACATTAGAGAGGTGTGAAGATAACATGGTGTTCACTATGGAGTCTCAGAAATCAGTGCCTGCTCCTTTCTTGACAAAGACATACCAACTTGTTGATGATCCTCTCACTGACCACATTGTATCTTGGAGTGATGATGAAACTACATTTGTTGTTTGGAGGCCTCCTGAGTTTGCTAGAGATCTTCTTCCCAATTTTTTCAAGCATAACAACTTCTCAAGCTTTGTTAGGCAACTAAATACATATGGTTTCAAGAAGGTTGTTGCTGATAGGTGGGAGTTTGCAAATGATTACTTCAAAAAAGGAGCTAAGCATTTGTTATGTGAAATCCACAGGAGAAAAACCCCTCAACACTATCAACAACAATACTACGAACAATCGCCACAAATTTTTCAACCAGATGAAAGTATATGCTGGATTGATTCTCCATTACCATCTCCTAAATCAAACACCGATATCTTAACAGCACTTTCTGAGGATAATCAAAGATTAAGGAGAAAGAATTTCATGCTGTTATCAGAACTCAGTCACATGAAGAATCTTTACAATGATATTATATATTTCATTCAAAACCATGTGAGTCCTGCTTCTCCCTTTGAACAAAGAAGCAACAATAGTGCTACTATTTTGAAGCTTGTTGAATTGGATTCATCATCACCTCAATTACCAAATGATAAAGATTGTAATAGCTCTTCTGTGAAGCTCTTTGGTGTTCCTCTTTGTGGAAAAAAGAGGGTTCATCCTAGTAATCTTGATTAA 765 0.366 MAFTLERCEDNMVFTMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANDYFKKGAKHLLCEIHRRKTPQHYQQQYYEQSPQIFQPDESICWIDSPLPSPKSNTDILTALSEDNQRLRRKNFMLLSELSHMKNLYNDIIYFIQNHVSPASPFEQRSNNSATILKLVELDSSSPQLPNDKDCNSSSVKLFGVPLCGKKRVHPSNLD* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3118 254 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Mtr5g3118 254 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 250 IPR027725 -
Mtr5g3118 254 Gene3D - 18 117 IPR036388 -
Mtr5g3118 254 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 10 250 - -
Mtr5g3118 254 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g3118 254 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g3118 254 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g3118 254 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g3118 254 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g3118 254 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3118 Mtr-Chr5 39934745 39936244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3118 20 249 HSF AT1G46264 52.397 3.41e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr5g3118 HSF_DNA-bind 4.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3118 K09419 - gmx:100527682 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3118 5 39934745 39936244 Mtr5g3118 5 39934745 39936244 ECH