Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3117 ATGCGTCCACCGGTGAAGAGAGTTGATTACAAGGTAGGAGATAAAGTAGAAGTATGCAGCAAAGAAGAAGGGTTTGTAGGTTCATACTTTGAAGCTACAATTGTTTCATGTCTAGAGAGTGGAAAATATGTGATCCGTTACAAGAATCTTCTTAAAGATGACGAATCGGAACTTCTTATGGAAACACTTTTTCCAAAAGATCTTCGTCCATTACCGCCACGTGTTCGTAATCCTTCGAGGTTTGAACTCAATCAGAAAGTTGACGTGTTTGATAACGATGGTTGGTGGGTAGGGAAAATTGCTAGCGAGAAGATCTTGATGGAAAAGAGTTACTACTATAGTGTGTATTTTGACTATTGCCATCAAACTATTTACTACCCTTGTGATCAGATTAGGGTTCATCAAGAATTGGTTTGGGGAGACTGGATCTTCGAGGCATAA 441 0.3946 MRPPVKRVDYKVGDKVEVCSKEEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESELLMETLFPKDLRPLPPRVRNPSRFELNQKVDVFDNDGWWVGKIASEKILMEKSYYYSVYFDYCHQTIYYPCDQIRVHQELVWGDWIFEA* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3117 146 Gene3D - 1 74 - -
Mtr5g3117 146 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 145 - -
Mtr5g3117 146 SMART agenet_At_2 8 76 IPR014002 -
Mtr5g3117 146 SMART agenet_At_2 79 139 IPR014002 -
Mtr5g3117 146 Pfam Agenet domain 13 73 IPR008395 -
Mtr5g3117 146 PANTHER - 8 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3117 Mtr-Chr5 39927012 39927571 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3117 20 98 PHD Transcription Factor Family AT5G58610 34.343 1.34e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3117 - - mtr:MTR_4g079980 240.736