Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3111 ATGGCTTCTAGAGCTGTCATTGCTCCAACCGAACAAAACCAACCCAGAGGTGAGAATAAGCAGAAGAATATGGGGGTTGAAGGAAGAAACAGAAAAGTACTTCAAGATATCCAAAATCTTGTGATCAACCCAGCAGATCTTGGTGCTAATGCTAATGTCACCAAACGCCTCACAAGGGCTCAGTTAGCGGCTCTTGCTCAAGCCGCAGCCGAGAAGAACAAGAACTTTGTTCCTGCAACAAGGGTGGAACAAGCTCAGAAGCCTGCAGAATCTGAAGTTATTGTCATCAGCTCTGATGAAGAATCTGAGGAAGTGAAGGAGAAACAAGCTGTTAGAGAAAGAAAAATTAGAGAAAGATCCACCAAGAAAATTGTCAAGACCTTTAGTTCAGTGCTTTCAGCTAGAAGCAAGGCTGCTTGTAGAGTTGTGCCCAAGGATTTTGTTGAGAACATTGATGCATCTGATAAGGAAAATGAATTGGCTGCAACTGAGTATATTGATGACATCTACAAGTATTACAAACTTTCTGAAGATGATGTTCGTGTGCATGATTACATGGCTTCTCAGCCAGATATAAATGTTAAGATGAGAGCAATTCTTATTGACTGGTTGATTGAAGTGCATAGGAAATTTGAACTCATGCCGGAAACGTTCTATCTGACTCTCAACATTGTTGACCGATTCTTGTCCACAAAGGCTGTACCTAGAAAGGAACTTCAGCTTGTTGGCATAAGCTCAATGCTTATTGCATCAAAGTATGAAGAGATTTGGGCACCAGAGGTCAATGATTTTGTATGCATATCAGACAATGCATATGTTAGAGAACAGGTTCTGGTTATGGAGAAAACAATCTTGAGAAATCTTGAATGGTATTTGACAGTTCCTACTCCTTATGTCTTTCTGGTTCGGTACATCAAAGCCTCAACCCCCTCTGACAAAGAGATGGAAAGTATGGTGAATTTCCTTGCTGAACTTTCTATGATGCATTATGCTACTGTATCCTCGTACTGCCCTTCAATGATTGCTGCTTCTGCTGTATACGCGGCAAGATCAACTCTTGAGAGGAGCCCTTTTTGGACTGATACTCTGAAGCACTACACAGGCTACTCTGAGGAACAACTAAGGGATTGTGCCAAACTCATGGCGAGCTTTCATTCTGCTGCTCCAGAGAGTAGGCTAAGGGCAATTTACAAGAAGTTCTGTAGCTCTGATCGTTGTGCTGTTGCTCTTATGACTCCAGCCAAAAATTTGTCTTCAGAATCTTGA 1266 0.4186 MASRAVIAPTEQNQPRGENKQKNMGVEGRNRKVLQDIQNLVINPADLGANANVTKRLTRAQLAALAQAAAEKNKNFVPATRVEQAQKPAESEVIVISSDEESEEVKEKQAVRERKIRERSTKKIVKTFSSVLSARSKAACRVVPKDFVENIDASDKENELAATEYIDDIYKYYKLSEDDVRVHDYMASQPDINVKMRAILIDWLIEVHRKFELMPETFYLTLNIVDRFLSTKAVPRKELQLVGISSMLIASKYEEIWAPEVNDFVCISDNAYVREQVLVMEKTILRNLEWYLTVPTPYVFLVRYIKASTPSDKEMESMVNFLAELSMMHYATVSSYCPSMIAASAVYAARSTLERSPFWTDTLKHYTGYSEEQLRDCAKLMASFHSAAPESRLRAIYKKFCSSDRCAVALMTPAKNLSSES* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3111 421 Pfam Cyclin, C-terminal domain 295 413 IPR004367 -
Mtr5g3111 421 SMART Cyclin_C_2 295 414 IPR004367 -
Mtr5g3111 421 SUPERFAMILY Cyclin-like 158 292 IPR036915 -
Mtr5g3111 421 MobiDBLite consensus disorder prediction 1 20 - -
Mtr5g3111 421 PANTHER CYCLINS 23 416 IPR039361 -
Mtr5g3111 421 PANTHER CYCLIN-B1-4 23 416 - -
Mtr5g3111 421 CDD CYCLIN 196 285 IPR013763 -
Mtr5g3111 421 Gene3D - 182 293 - -
Mtr5g3111 421 SMART cyclin_7 299 383 IPR013763 -
Mtr5g3111 421 SMART cyclin_7 202 286 IPR013763 -
Mtr5g3111 421 CDD CYCLIN 293 381 IPR013763 -
Mtr5g3111 421 Pfam Cyclin, N-terminal domain 168 292 IPR006671 -
Mtr5g3111 421 MobiDBLite consensus disorder prediction 1 27 - -
Mtr5g3111 421 SUPERFAMILY Cyclin-like 296 416 IPR036915 -
Mtr5g3111 421 Gene3D - 168 409 - -
Mtr5g3111 421 PIRSF Cyclin_A_B_D_E 1 421 IPR039361 -
Mtr5g3111 421 ProSitePatterns Cyclins signature. 197 228 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3111 Mtr-Chr5 39817566 39820741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3111 1 418 Core Cell Cycle Gene Families AT2G26760 51.551 3.15e-140 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3111 K21777 - gmx:547782 540.421