Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3103 ATGAGAAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAGCTGATGAAGATATAGGGAAGATTGCATTGGCTGTGCCTCTTCTAGTTTCAAAAGCACTAGAGCTATTTCTGCAAGATTTGTGTGATAGAACATACGAGATAACACTTGGGAGGGGAGCAAAGACCGTGAATGCTTTTCATTTAAAACAGTGCATACAAACTTGTAATGTCTTTGATTTTCTGAAAGATACTGTGAGCAAAGTTCCCGATTTAGGCGGTTCTGCTGCAACTGGTGACGACCAAACTGTCACTAAGAGAAGGAAAGTTTCTGAAGATGATGATGACGATGACAGCGACGAGGAGATCAAGAGAAGTAAAATGCGAGAACCTGCGCATACCAGTGGAAGGGGTAGGGGTAGAGGTAGGGGTCGTGGCCGTGGCCGTGGAAGTAAAACCGTAGATCAAGAGATCAATTCACATGTCAAGTTTGAAGATGATTGTGAAGCATCGAAGCAAAATGGTAACCACACTCAAAATAATGAAAGCCCGGAAATTGTGCGAGAGTCCGATGAAGTTAAATTGAGTTCACCAGTCAGAGAACCTGAGGAAGTTAAACATTGTTCACCGGTCAGAAAACCAGCTGAAGTGGTCGTTCGAAATTTTGATTTAAATCTGAATCCGGATCCGGATGACGACATGGATGTAATATCCACACCAACTCCTATCCCAACTGGTTCATCTTCAAAATCAGTTTCAGAAGAGAAGATGAAATCAATTTCAGAAGAGAAGATTGAGGAATACCCTGGATGGTCCTTGTCTGATATGGAAAAAATGGCTATTGATCCCTTACAACTAGCCAACTTAAGTAAAAGGATTGATGAAGATATAGAAGATTATGATGAAGAAGTGTAG 909 0.4114 MRKKLDTRFPAARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHLKQCIQTCNVFDFLKDTVSKVPDLGGSAATGDDQTVTKRRKVSEDDDDDDSDEEIKRSKMREPAHTSGRGRGRGRGRGRGRGSKTVDQEINSHVKFEDDCEASKQNGNHTQNNESPEIVRESDEVKLSSPVREPEEVKHCSPVRKPAEVVVRNFDLNLNPDPDDDMDVISTPTPIPTGSSSKSVSEEKMKSISEEKIEEYPGWSLSDMEKMAIDPLQLANLSKRIDEDIEDYDEEV* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3103 302 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 301 - -
Mtr5g3103 302 MobiDBLite consensus disorder prediction 238 252 - -
Mtr5g3103 302 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Mtr5g3103 302 MobiDBLite consensus disorder prediction 182 208 - -
Mtr5g3103 302 MobiDBLite consensus disorder prediction 221 261 - -
Mtr5g3103 302 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Mtr5g3103 302 PANTHER HISTONE SUPERFAMILY PROTEIN 1 301 - -
Mtr5g3103 302 MobiDBLite consensus disorder prediction 146 170 - -
Mtr5g3103 302 MobiDBLite consensus disorder prediction 119 135 - -
Mtr5g3103 302 Gene3D Histone, subunit A 1 72 IPR009072 GO:0046982
Mtr5g3103 302 MobiDBLite consensus disorder prediction 88 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3103 Mtr-Chr5 39723882 39727430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3103 1 128 CCAAT-HAP5 Transcription Factor Family AT3G12480 69.630 9.32e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mtr5g3103 CBFD_NFYB_HMF 2.6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3103 K21752 - gmx:100814800 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3103 5 39723882 39727430 Mtr5g3103 5 39723882 39727430 ECH