Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3101 ATGGTGGCCGCAAAGAAGACCAAGAAGACTCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGACTGGAAAATATACCCTCGGGTATAAAACTGTTCTCAAATCCCTTAGGAGTTCCAAAGGGAAATTGATTATCACTGCTAACAACTGTCCTCCGTTGAGGAAGTCTGAATTTGAGTACTATGCTATGTTGGCTAAGGTTGGAGTCTACCATCACAATGGAAACAATGTTGACTTGGGCACTGCTTGCGGAAAGTACTACAGAGTGTGCTGCCTCGGCATTATTGATCCTGGTGATTCCGACATCATCAAGACAATTCCCGGAGAACAGTAA 339 0.4454 MVAAKKTKKTHESINNRLALVMKTGKYTLGYKTVLKSLRSSKGKLIITANNCPPLRKSEFEYYAMLAKVGVYHHNGNNVDLGTACGKYYRVCCLGIIDPGDSDIIKTIPGEQ* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3101 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Mtr5g3101 112 SUPERFAMILY L30e-like 13 106 IPR029064 -
Mtr5g3101 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Mtr5g3101 112 PANTHER RIBOSOMAL PROTEIN L30E-RELATED 1 112 - -
Mtr5g3101 112 Gene3D - 2 108 IPR029064 -
Mtr5g3101 112 PANTHER RIBOSOMAL PROTEIN L30 1 112 IPR039109 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3101 Mtr-Chr5 39710866 39711466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3101 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 81.250 9.60e-68 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3101 K02908 - gmx:100806260 218.779