Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3099 ATGTCAAGTGGAGCAACACACTGGTGTTATGAATGCAATCGGCCAATTGTGCTTGAAGGGAGAGACGTCGTTTGCCCTTACTGTGATGAGGGATTTGTACAAGAACTTAACGAGATGCGAGGCACTGCACCTCAAAATACCTTTCCATCACGCTCGGGAGAGTTTAATCAAATGCCTGACTTATTTGATGCTATACATGCTTTTGTGGGACACAGAGGTTCTGACAATAGGTTTGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAATGCACCCAAACTTTGATGTTAGAGGGAGGTCTAGTTCTGTCCCAGTTCCTGAACAGGGCTGGGGCGTTTATAGTTCTGGTCCTTTTTTAGTATTTCACGGTCAAGTTCCTGGACTAACCTTGCCTAATGGAAGCCCGAGAGGTGGTCCTAGGCGTGGCGATTTTGGTGACTATTTTATGGGTTCTGGACTGGAAGAACTTATTGAACAACTAACCATGAATGATCGGCGTGGTCCACCCCCAGCTGCACGATCTTCAATTGATGCCATGCCTACTATTAGGATCACACAGGCGCATCTTCGCTCCGATTCACATTGTCCAGTTTGCAAAGAAAAATTTGAACTTGGTTCTGAAGCCAGAGAGATGCCATGTGACCATATTTACCATTCTGAATGCATTGTTCCTTGGTTGGTTCAACATAACTCATGTCCTGTTTGCCGTGTTGAGCTACCACCCCAAGGACAGATGAGTTCTCGTGGTAGTAGTCGAAGCAACAGTGGTGGAAATGGTAGCTCAAGGGGCAGGGAGAGTGACCGTCCAAACAATGGAAGGAGAAATCCGTTTTCGTTTCTGTGGCCGTTCCGTTCTTCTAGTTCAAACAATAATCAATATTCTGAGACTGGAGGTAGCAGCTCTTCAACCAATGCTGACCAGAATAATGGAACACGTTATAATGGATGGCATTATGATAACTAA 978 0.453 MSSGATHWCYECNRPIVLEGRDVVCPYCDEGFVQELNEMRGTAPQNTFPSRSGEFNQMPDLFDAIHAFVGHRGSDNRFGLMDAVDNFMRHRMAGMHPNFDVRGRSSSVPVPEQGWGVYSSGPFLVFHGQVPGLTLPNGSPRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSECIVPWLVQHNSCPVCRVELPPQGQMSSRGSSRSNSGGNGSSRGRESDRPNNGRRNPFSFLWPFRSSSSNNNQYSETGGSSSSTNADQNNGTRYNGWHYDN* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3099 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Mtr5g3099 325 SMART ring_2 200 240 IPR001841 -
Mtr5g3099 325 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Mtr5g3099 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 308 - -
Mtr5g3099 325 PANTHER OS03G0351800 PROTEIN 1 308 - -
Mtr5g3099 325 SUPERFAMILY RING/U-box 180 247 - -
Mtr5g3099 325 MobiDBLite consensus disorder prediction 246 325 - -
Mtr5g3099 325 CDD RING-H2_RNF126_like 200 241 - -
Mtr5g3099 325 Pfam Ring finger domain 199 241 IPR001841 -
Mtr5g3099 325 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Mtr5g3099 325 MobiDBLite consensus disorder prediction 285 325 - -
Mtr5g3099 325 MobiDBLite consensus disorder prediction 248 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3099 Mtr-Chr5 39692954 39697996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3099 144 249 C3H Transcription Factor Family AT5G01980 44.444 5.45e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3099 K11982 - gmx:100813674 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0986 3 15720200 15722844 Mtr5g3099 5 39692954 39697996 PCT