Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3097 ATGGCTGTTACCTTCTCAGATCTTCACACAGAAGAGGGTCTCAAATCCCTCAATGAATTCCTCTCTGGAAAAAAATATATTTCTGGGGATCAATTGACAAAGGATGATATCAAAGTGTACGGATATGTTTCTGAGAAACCAAGTGATGCTTTTGCCAATGTTGCTGGTTGGTACGATGTGGTCTCTTCACATCTTGCTGCAAGTTTCCCTGGAAAAGCTCAAGGTGTGAAATTCAGTGGAAAAGTTGCTCCAGCTGCAGAAGCACCTGCTAAAGCTGCTGCACCTGCTGCTGAAGATGATGATGATCTTGACCTCTTTGGTGATGAAACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCATCTAAAAAGCCCGCAAAGAAGAAAGAGAGTGGCAAGTCTTCCATTCTGCTTGATGTTAAGCCATGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCACCGTTGAAATTCCCGGTTTAACCTGGGGAGCATCCAAGCTGGTTGCTGTTGGATACGGAATCAAGAAGCTGCAGATCATGTTGACCATTATTGATGATCTTGTATCTGTGGACGACCTCATTGAAGAAAGACTCACAGTTGAGCCAATTAACGAGTATGTCCAGAGCTGTGACATTGTCGCATTCAACAAAATTTAA 672 0.442 MAVTFSDLHTEEGLKSLNEFLSGKKYISGDQLTKDDIKVYGYVSEKPSDAFANVAGWYDVVSSHLAASFPGKAQGVKFSGKVAPAAEAPAKAAAPAAEDDDDLDLFGDETEEDKKAAEEREASKKPAKKKESGKSSILLDVKPWDDETDMKKLEEAVRTVEIPGLTWGASKLVAVGYGIKKLQIMLTIIDDLVSVDDLIEERLTVEPINEYVQSCDIVAFNKI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3097 223 CDD EF1B 132 223 IPR014038 GO:0003746|GO:0006414
Mtr5g3097 223 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Mtr5g3097 223 MobiDBLite consensus disorder prediction 111 131 - -
Mtr5g3097 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Mtr5g3097 223 SUPERFAMILY eEF-1beta-like 131 223 IPR036219 -
Mtr5g3097 223 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 223 - -
Mtr5g3097 223 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 223 - -
Mtr5g3097 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 212 223 IPR001326 GO:0003746|GO:0005853|GO:0006414
Mtr5g3097 223 Gene3D - 127 223 IPR014717 -
Mtr5g3097 223 Pfam EF-1 guanine nucleotide exchange domain 136 223 IPR014038 GO:0003746|GO:0006414
Mtr5g3097 223 SMART EF1_GNE_2 134 223 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3097 Mtr-Chr5 39650150 39653318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3097 1 223 Eukaryotic Initiation Factors Gene Family AT5G12110 70.614 4.01e-104 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3097 K03232 - gmx:100500082 303.523