Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3094 ATGTCTTCATCATCATCGGTCGATACTAAAAAAGGAAAATGGTCAAAAGAAGAGGATGAAATATTAAAAGCATATGTGGAAAAACATGGAACCAGAAATTGGGACGAGGTATCAAAGAACACAGGACTTGCACACTTCGGAAGAAGTTGCCGTTTTAGATGGTATAATAACCTAAGACCTGGTGTAAAAAAGGGTCCATTTAGTAAAGAAGAAGAAAATAAAGTCTTTCAGTTACGTAAGAAGTTTGGTGGATTCAAATGGTCTAAAATCGCTCGCGAGTTGCCTGGAAGAACCGATAATGACATCAAGAACTTTTGGAATGCGAGAAAGAGAAAACATAAAAAGTGTGGCTTGTCACCCTTCCCTGACAACATGGAACTGGATGATGAGTTGAATGGTGGTTCCAGTGGCCAACAAGTTGAGGATTCTCAAGAAAATAACTTTGATGTCTCAAATAAGCAGTTTTCAAAGTTGGTTGATGATTCAAATATGTTCTACAATAATGTGGGAAGTACTTCTACAAGCAATCATACTACCTCGAGATTGATTGATAGGGGTGGCGCTGGAATTTCACCTATACTTTTGACTATGCAATCTGATCTGCCTCCACTCCCTCAGAATCCACCACCTATGGAGACTCAATATCAGATGTCAGGATCAATTTCTCCATATACAGAAGAGAATTGGGAAGGTTTGGATGCTAGTCGCGTGAATTCCTCTAAGATAAATTTTGTTGATGAAGAAGGGAAGAAGCCAGTTTCTTCGGAGAACGATTTTGAAGGAAACCATAACGACTTAATTGCTACAGATATTTGGTTTAACTATGACTTATATGAAAAAGACATTAACAACTTACATGACAAGCTTCAGCATGATGTAAATGATTCCTTGGACACAACTATGTATGGAAAAGGGGAGGAGCCAGTTTCTTCGGAGCATGATTTTGAAGTAAACCATGATGACTTAATGAATCCGAAACTTTGGTTTGACATCAACGAATTACTCAATGACGATGACAATAACTTTGATCATGACAAGCTTCCACAACTATATATGGAGAAGGCATAG 1068 0.3811 MSSSSSVDTKKGKWSKEEDEILKAYVEKHGTRNWDEVSKNTGLAHFGRSCRFRWYNNLRPGVKKGPFSKEEENKVFQLRKKFGGFKWSKIARELPGRTDNDIKNFWNARKRKHKKCGLSPFPDNMELDDELNGGSSGQQVEDSQENNFDVSNKQFSKLVDDSNMFYNNVGSTSTSNHTTSRLIDRGGAGISPILLTMQSDLPPLPQNPPPMETQYQMSGSISPYTEENWEGLDASRVNSSKINFVDEEGKKPVSSENDFEGNHNDLIATDIWFNYDLYEKDINNLHDKLQHDVNDSLDTTMYGKGEEPVSSEHDFEVNHDDLMNPKLWFDINELLNDDDNNFDHDKLPQLYMEKA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3094 355 SMART sant 63 112 IPR001005 -
Mtr5g3094 355 SMART sant 10 60 IPR001005 -
Mtr5g3094 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 114 IPR017930 -
Mtr5g3094 355 MobiDBLite consensus disorder prediction 117 146 - -
Mtr5g3094 355 Gene3D - 66 116 - -
Mtr5g3094 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 62 IPR017930 -
Mtr5g3094 355 Pfam Myb-like DNA-binding domain 14 74 - -
Mtr5g3094 355 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 1 158 - -
Mtr5g3094 355 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 158 - -
Mtr5g3094 355 SUPERFAMILY Homeodomain-like 8 106 IPR009057 -
Mtr5g3094 355 Gene3D - 10 63 - -
Mtr5g3094 355 CDD SANT 66 107 IPR001005 -
Mtr5g3094 355 MobiDBLite consensus disorder prediction 131 146 - -
Mtr5g3094 355 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Mtr5g3094 355 CDD SANT 13 58 IPR001005 -
Mtr5g3094 355 ProSiteProfiles Myb-like domain profile. 59 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3094 Mtr-Chr5 39630780 39632133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3094 11 141 MYB Transcription Factor Family AT2G26950 52.672 9.49e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g3094 Myb_DNA-bind_6 5.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3094 K09422 - mtr:MTR_5g088610 720.694