Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3093 ATGGAGAGAGTCAAGCTCATGATTACTTATGGTGGAGAAATCCAACCTAGGCTTACTGCTCTTCATGATCATCGTCGTTATTCCTACATCGGTGGAGACAATAAAATCATCACCGTCGATCGTAATATCAACTTCTCCGACCTCATGGCAAAGCTTTCCTCATTCATGGTTTCCAATGTTTGCTTCAAGTATCAACTCCTTGGTGAAGATTTTGATGCTTTGATCCCAGTTTATAACGAAGAAGATCTCAATCATATGATGTTCGAGTATGATCGTATGTGTCACTTTTCACGAAAGCCTGCATGGTTGAGGGTCTTCCTCTTCCCTGTCCCTGTTAACAACAACAAGGCATCTTTTGATTCTTTGGCTTCTGCTATCAAGCTCAAACAATTTTCCGTCAACTCGCTCAATTCCGTTCATGTTCCTCCTGTAGAAGATTTATCTCCTCTTACTACACCTCCACCTCCGCAATCGACGAGGAGTCAGATTGAATTCCCAAAGACTTCTCTGGATTTTGCGCCTAAGGATACGGTCACAAAAACTAAGATGAAGCAATTTCATGGACTGCATATCGTGAATGATGAATTTGAAGATATTCTAAAACTGTTTTTGAAGCGTAATTTTTCAAAGAAGAAGGAATTTCATGGACTACACATCGTGAACGATGAATTCGAAGATATTCTACAACTGTTTTGA 696 0.4009 MERVKLMITYGGEIQPRLTALHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSSFMVSNVCFKYQLLGEDFDALIPVYNEEDLNHMMFEYDRMCHFSRKPAWLRVFLFPVPVNNNKASFDSLASAIKLKQFSVNSLNSVHVPPVEDLSPLTTPPPPQSTRSQIEFPKTSLDFAPKDTVTKTKMKQFHGLHIVNDEFEDILKLFLKRNFSKKKEFHGLHIVNDEFEDILQLF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3093 231 PANTHER OS05G0427100 PROTEIN-RELATED 3 171 - -
Mtr5g3093 231 CDD PB1_UP2 7 108 - -
Mtr5g3093 231 SMART PB1_new 22 110 IPR000270 GO:0005515
Mtr5g3093 231 Pfam PB1 domain 27 109 IPR000270 GO:0005515
Mtr5g3093 231 Gene3D - 28 109 - -
Mtr5g3093 231 SUPERFAMILY CAD & PB1 domains 24 110 - -
Mtr5g3093 231 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 3 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3093 Mtr-Chr5 39626958 39627653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3093 3 139 MAP Kinase Kinase Kinase AT5G57610 31.429 4.85e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3093 - - mtr:MTR_5g088590 468.774