Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3077 ATGGGTTTTCCTCCTCAACAAAAGATTTTCCATCTGATCATATTCTTTGGTTATTGTTTTTGTCTTGGTAGAGCCATTGATTGTGGTGGAAATCATGTTACAAATATCATTGTTGTTGATCAACAAGGAAGAGGAGCATTCAAAATGATTCAACATGCCATTGATTCAATAGTGAATAACAATAATCAGTGGGTTAAGATTCACATAAATCCTGGAAAATATGTGGAAAATATTTATATTCCCAACGACAAACCATGCATCATTTTAGAAGGATCTGATAGAATAACCACAATAGTTAGTCATGGTGATAGACAAGCAACAACAACATTTGTTTCAAATCCACCTAATGTGATTTTGAGTGGTATTACATTTGAGAATACATTTGGAAGTGATGGAGCAGCTGTAGCTGCTACTATAAGTGGTGATAAATCAGCAATATTTAACTGTGGTTTCTTGGGTTATCAAGATACTTTGTGGGATAGAACGGGACGTCATTATTTTAAGAATTGTTATATTCAGGGTGACGTTGACTTTATTTTTGGTGAAGCTCAATCTTTTTACGAGGATTGTGTGATAAATGCAACACAAGATATATCTAAATTTTCGGGATATATCACTGCCCAATTTAGGAATTCATCAAATGAACCAAGTGGTTTTGTTTTTAGAGGAGGACGCATTGACGGAATTGGGAAAGTGAATCTAGGAAGGGCATGGGGCCCTTATTCAAGAGTTATATTTTGGGAAACATACCTTTCTTCGGTTGTACTTCCTCAAGGATGGGATGCTTGGGACTACAAAGGCCATGAAAACAACTTCGTCTATGCTGAAGTTGATTGTACAGGACCAGGGTCCAATACTAAAGGGCGTGTACCTTGGGAGAAGAAGCCGAATGAAATAAACATAAATGATTATTCTTTATCATCTTTCATAAATGAAGATGGATGGCTTAACAATATACCAAATATATTTCTATAA 975 0.3549 MGFPPQQKIFHLIIFFGYCFCLGRAIDCGGNHVTNIIVVDQQGRGAFKMIQHAIDSIVNNNNQWVKIHINPGKYVENIYIPNDKPCIILEGSDRITTIVSHGDRQATTTFVSNPPNVILSGITFENTFGSDGAAVAATISGDKSAIFNCGFLGYQDTLWDRTGRHYFKNCYIQGDVDFIFGEAQSFYEDCVINATQDISKFSGYITAQFRNSSNEPSGFVFRGGRIDGIGKVNLGRAWGPYSRVIFWETYLSSVVLPQGWDAWDYKGHENNFVYAEVDCTGPGSNTKGRVPWEKKPNEININDYSLSSFINEDGWLNNIPNIFL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3077 324 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 322 - -
Mtr5g3077 324 PANTHER PECTINESTERASE 1 322 - -
Mtr5g3077 324 SUPERFAMILY Pectin lyase-like 34 319 IPR011050 -
Mtr5g3077 324 ProSitePatterns Pectinesterase signature 2. 172 181 IPR033131 -
Mtr5g3077 324 Gene3D - 30 322 IPR012334 -
Mtr5g3077 324 Pfam Pectinesterase 37 312 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3077 Mtr-Chr5 39487595 39490683 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3077 27 269 Carbohydrate Esterase AT2G19150 43.529 1.98e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3077 - - mtr:MTR_5g088290 539.65