Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3072 ATGGGGATTCAAACAATGGGTTCTCAAAGTAATGGGCAACAGTCTCATTTACAGGCTAATCAGTTAGTTAAGCAAAATTCATGGTATGGTCTAACTCTTGATGAGGTTAATAGTCTACTAGGAGATTTGGGGAAGCCGTTAGGGAGCATGAATCTTGACGAGCTTCTTCAGAATGTGTGGACTGCTGAAGGAAATAAGGTTGTAGGGATGGAGAGTGAGCAGGTTTCGTCATCGTCTTCTCTTCAACGGCAGGCTAGTATGACGTTGGCTCGTGCTTTGAGTGGGAAGACGGTGGATGATGTATGGAGAGAAATCCAGCTAGGTCAGAAGAAACAATATGGAGACGACGTGAAAGTCGAGGATAGGGAAATGAGTCTTGGTGGTACGACTTTGGAAGATTTTTTAGTGCAAGCAGGGCTTTTTGCTGGAGCTTCTACTAGTCCGACGGTGGGGTTGGATGCAATGGATACCGCTATTCCTCAAAGCTTTCAACCGAATACAAGCTTGGTATCCTCTTCTTCAATTAGTAGTTTGTCAGATGCAAAACCAGGTCGCAAAAGGGATGCTCCGGATGCATATGAGAAGGCTTTGGAAAGGAGGCTGAGAAGGAAAATCAAGAATAGGGAATCTGCCGCTCGTTCACGTGCAAGAAAACAGGCTTATCATAATGAACTGGTTACCAAGGTTACACTGCTAGAACAACAAAATATGCAGCTCAAGAAAGAGAAGGAGTTTGAGCAGGGGCTACAACCTGAATCATCACCTGAACCTAAATACCGTCTTCGAAGAATAAGTTCTGCCATTTTCTGA 810 0.4432 MGIQTMGSQSNGQQSHLQANQLVKQNSWYGLTLDEVNSLLGDLGKPLGSMNLDELLQNVWTAEGNKVVGMESEQVSSSSSLQRQASMTLARALSGKTVDDVWREIQLGQKKQYGDDVKVEDREMSLGGTTLEDFLVQAGLFAGASTSPTVGLDAMDTAIPQSFQPNTSLVSSSSISSLSDAKPGRKRDAPDAYEKALERRLRRKIKNRESAARSRARKQAYHNELVTKVTLLEQQNMQLKKEKEFEQGLQPESSPEPKYRLRRISSAIF* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3072 269 SMART brlzneu 195 267 IPR004827 GO:0003700|GO:0006355
Mtr5g3072 269 SUPERFAMILY Leucine zipper domain 199 245 IPR046347 GO:0003700|GO:0006355
Mtr5g3072 269 Coils Coil 222 242 - -
Mtr5g3072 269 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 36 266 IPR043452 GO:0003700|GO:0045893
Mtr5g3072 269 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 202 217 IPR004827 GO:0003700|GO:0006355
Mtr5g3072 269 CDD bZIP_plant_BZIP46 199 247 - -
Mtr5g3072 269 Pfam bZIP transcription factor 199 243 IPR004827 GO:0003700|GO:0006355
Mtr5g3072 269 PANTHER BZIP TRANSCRIPTION FACTOR 36 266 - -
Mtr5g3072 269 Gene3D - 197 248 - -
Mtr5g3072 269 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 197 242 IPR004827 GO:0003700|GO:0006355
Mtr5g3072 269 MobiDBLite consensus disorder prediction 165 191 - -
Mtr5g3072 269 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3072 Mtr-Chr5 39441993 39446587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3072 22 269 bZIP Transcription Factor Family AT3G56850 43.310 3.22e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr5g3072 bZIP_1 6.7e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3072 K14432 - gmx:100798549 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3072 5 39441993 39446587 Mtr5g3072 5 39441993 39446587 ECH