Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3071 ATGGCTAAGAAACGAAAGCTTCGATCTTCTGACCCTGAACCCACCAAACAAGCTGAACCCGAACCACAACAAGAAGAAGTAGCCGAAGAAGAACCAACAACACAAGAAGAAGAAAACACACCGATTGAAGAAGATCAACCTCAAAACGAAGGTGAAGGTGAAGAAGAACCAGAAGAAGAGGTAGCAGAAGAAGAAGAGGATGATCAACAAGGAGAAGACGAAACCCTAGAAAACCAGCAACAACAAGATGGCGGTGAAGCTTCAAACAACGCTGCCGTGTCGGAGCAGACTGTGACGGTGGAAGCTAACGGTGGTGGTGAAAACAATAACGGAGAAGAAGAGGAAGATCTTGAATTGGAAGATGAACCTGTTGAGAAGCTTCTAGAACCATTCACGAAGGAGCAATTACACGCGCTTGTGAAACAAGCGGTTGAGAAGTATCCAGATCTGTCTGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATCTTCGTTCACGGTCTTGGATGGGATGCTACCGCTGAAACGCTAACCACCACGTTTTCGAAGTACGGTGAAATTGAGGATTGTAAGGCTGTGACTGACAAGGCATCTGGAAAATCAAAGGGATATGCATTTATTTTGTTTAAGCATCGGACTGGGTGTCGTCGTGCGTTGAAGCAGCCTCAGAAAGTGATTGGGAATAGGACTACATCGTGTCAATTGGCTTCCGCTGGACCTGTTCCGGCCCCACCACCGAATGCGCCACCGGTGTCTGAGTATACTCAAAGGAAGATTTTTGTGAGTAATGTGAGTTCTGATATTGATCCTCAGAAGCTGCTTGAGTTTTTCAAGCAGTTTGGAGAGGTGGATGATGGCCCATTGGGGTTGGATAAGGCGACTGGGAAGCCGAAAGGTTTTGCGCTCTTTGTTTATAAGACGGTAGAGAGTGCTAAGAAGGCGTTGGAAGAGCCGAATAAGGTGTTTGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGTTACAACAAGGGGGGTCATTATCAGCAGCAACATCATCATCAGCCTCATCATTCGCATCATCACCATCATGGTGGTGGTGGTGGTCACTACAATCCGAGGAAAGAAAAGAAGTATTCACATGGTGGTGGTGGCCCATCACATGGTGGTCACTTAATGGCTCCTACTGGTCCTGCTGCTGGTGGTTACAATGCGGGTGTGCCGCCTCAGGGATTGAATCCGGCACTTGGACAGGCTTTGTCCGCTTTGCTTGCTAATCAAGGAGCTGGATTGGGGCTTGGGAATTTGCTTGGAGGTCTTGGTGGTGCGCCTGTGAATCAAGCTGGTCCTCCTGCTGCGTATGGCAATCAGGCTGCTATGGGATATGGCCAGCCTGGGTTGCAGCCACAGTACCAGAATCCTCAGCTGGGGCAAAGCGGTGGTGTTAGACCTCATCCTGGTCCCGGTGGCGCTCCTTACATGGGTCACTAG 1494 0.4926 MAKKRKLRSSDPEPTKQAEPEPQQEEVAEEEPTTQEEENTPIEEDQPQNEGEGEEEPEEEVAEEEEDDQQGEDETLENQQQQDGGEASNNAAVSEQTVTVEANGGGENNNGEEEEDLELEDEPVEKLLEPFTKEQLHALVKQAVEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKAVDGPKGYNKGGHYQQQHHHQPHHSHHHHHGGGGGHYNPRKEKKYSHGGGGPSHGGHLMAPTGPAAGGYNAGVPPQGLNPALGQALSALLANQGAGLGLGNLLGGLGGAPVNQAGPPAAYGNQAAMGYGQPGLQPQYQNPQLGQSGGVRPHPGPGGAPYMGH* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3071 497 MobiDBLite consensus disorder prediction 1 121 - -
Mtr5g3071 497 Gene3D - 250 391 IPR012677 -
Mtr5g3071 497 SMART rrm1_1 166 238 IPR000504 GO:0003723
Mtr5g3071 497 SMART rrm1_1 262 334 IPR000504 GO:0003723
Mtr5g3071 497 MobiDBLite consensus disorder prediction 460 497 - -
Mtr5g3071 497 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 483 - -
Mtr5g3071 497 Gene3D - 157 243 IPR012677 -
Mtr5g3071 497 MobiDBLite consensus disorder prediction 75 106 - -
Mtr5g3071 497 MobiDBLite consensus disorder prediction 1 23 - -
Mtr5g3071 497 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 483 - -
Mtr5g3071 497 MobiDBLite consensus disorder prediction 343 403 - -
Mtr5g3071 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 338 IPR000504 GO:0003723
Mtr5g3071 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Mtr5g3071 497 SUPERFAMILY RNA-binding domain, RBD 245 370 IPR035979 GO:0003676
Mtr5g3071 497 SUPERFAMILY RNA-binding domain, RBD 153 245 IPR035979 GO:0003676
Mtr5g3071 497 Coils Coil 62 82 - -
Mtr5g3071 497 MobiDBLite consensus disorder prediction 24 74 - -
Mtr5g3071 497 CDD RRM_RBM24_RBM38_like 261 336 - -
Mtr5g3071 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 331 IPR000504 GO:0003723
Mtr5g3071 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Mtr5g3071 497 MobiDBLite consensus disorder prediction 351 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3071 Mtr-Chr5 39432179 39436750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3071 257 340 C2H2 Transcription Factor Family AT2G19380 30.952 8.68e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3071 K12741 - gmx:100792637 512.301