Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3068 ATGTCTTCTTCATCATCATCATCATCGACCGATACTAAAAAAGGAACATGGTCAAAAGAAGAAGATGAAATATTAAAAGCATATGTGGAAAAACATGGAACCAGAAATTGGAACGAGGTATCAAAAAATGCGGGGCTTATACGTTGCGGTAAAAGTTGTCGTCTAAGATGGTATAATCACCTACAACCAGATGTGAAAAAGGGTCCATTTAGTGAAGAAGAAAAATCTAAAGTTTTTGAGTTCTATATAAAGTATGGTGAATTCAAATGGTCTAAGCTGGCTCATGAGTTACCGGGAAGAAGCGATAATGACATCAAGAACTTTTGGAATGCGAGAAAAAGAAAACTTGAAAAGCTCGGCTTGTCACCCTTCCCCGACAACATGGAACCGGATCATAAGTTGAATAGTAGCCAACAAGTTGAGGATTCACAAGAAGATGAATTTAATATACCACAATTGAAATTTAGAAAATATCCATCAATTTTTGATGAGATAAATGAAAAACTTTTAGATGTTCCAAACATGTTCTACAATAATGTGGGAAGTACTTCAACATTGATTGATAGGGTTAGCAGCATTATTGGAACTTCTCATATTCATATACCTATAGCTCTACCCTCACCATGTTCATACCTTCCACTTCCTTCACCTATGATGCTTGATGAAAAAGGGAAGAAGCCAATTTCATTGGAGGACGATGTTGAAGCAAACCTTGATGATTTCATGGATTTGATTGACTTCAGTAATTTGGAGGACGATGTTGAAGCCGGCAGTCGTTTATTTGACAATGATGATATATAA 801 0.3608 MSSSSSSSSTDTKKGTWSKEEDEILKAYVEKHGTRNWNEVSKNAGLIRCGKSCRLRWYNHLQPDVKKGPFSEEEKSKVFEFYIKYGEFKWSKLAHELPGRSDNDIKNFWNARKRKLEKLGLSPFPDNMEPDHKLNSSQQVEDSQEDEFNIPQLKFRKYPSIFDEINEKLLDVPNMFYNNVGSTSTLIDRVSSIIGTSHIHIPIALPSPCSYLPLPSPMMLDEKGKKPISLEDDVEANLDDFMDLIDFSNLEDDVEAGSRLFDNDDI* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3068 266 SMART sant 13 63 IPR001005 -
Mtr5g3068 266 SMART sant 66 115 IPR001005 -
Mtr5g3068 266 CDD SANT 69 110 IPR001005 -
Mtr5g3068 266 CDD SANT 16 61 IPR001005 -
Mtr5g3068 266 Gene3D - 13 65 - -
Mtr5g3068 266 ProSiteProfiles Myb-like domain profile. 62 113 IPR001005 -
Mtr5g3068 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 117 IPR017930 -
Mtr5g3068 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr5g3068 266 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mtr5g3068 266 Gene3D - 66 118 - -
Mtr5g3068 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mtr5g3068 266 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 186 - -
Mtr5g3068 266 Pfam Myb-like DNA-binding domain 17 77 - -
Mtr5g3068 266 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3068 Mtr-Chr5 39400140 39401139 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3068 14 159 MYB Transcription Factor Family AT2G26960 47.799 4.71e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g3068 Myb_DNA-bind_6 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3068 K09422 - mtr:MTR_5g088640 510.375