Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3066 ATGGAGAGAGTCAAGCTCATGATTACCTATGGTGCAAAAATCCAACCTAGGCTTACTTCTCTTCATGATCATCGTCGTTATTCCTACATCGGCGGAGACAATAAAATCATCACCGTCGATCGTAATATCAACTTCTCTGACCTCATGGCAAAGCTTTCCACGTTCATGTTTTCCGATGTTTGCTTCAAGTATCAACTACTTGGTGAAGATTTGGATGCTTTGATCCCAGTTTATAACGAAGAAGATCTCAATCATATGATGTTCGAGTATGATCGTATGTGTCGCTTTTCACAAAAGCCTGCATGGTTGAGAGTCTTCCTCTTCCCGGTCCCTATTAACAACAACAAGGCATCTTTTGATTCTTTGGCTTCCGTCGACTCGCTCAATTCCGTTCAAGTTTTTCCTTTTGAAGAATATTCATCTCCTCCTACTACGCCTCCACATCCGTTCATGGCGACTAAGGACACGGTTACAAAAGCTGAGATGAAGAAATTTTGCGGAATACATGTTGTGAATGATGAATTTGAAGATATTCTAAAATTATATTTGAAGCGCAATTTTTCTAAGGTGAAGGACTTTCACGGACTGATGTCGTGA 597 0.4054 MERVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVCFKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPPHPFMATKDTVTKAEMKKFCGIHVVNDEFEDILKLYLKRNFSKVKDFHGLMS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3066 198 CDD PB1_UP2 7 108 - -
Mtr5g3066 198 Gene3D - 28 109 - -
Mtr5g3066 198 Pfam PB1 domain 27 109 IPR000270 GO:0005515
Mtr5g3066 198 PANTHER OS05G0427100 PROTEIN-RELATED 3 159 - -
Mtr5g3066 198 SMART PB1_new 22 110 IPR000270 GO:0005515
Mtr5g3066 198 SUPERFAMILY CAD & PB1 domains 24 110 - -
Mtr5g3066 198 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 3 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3066 Mtr-Chr5 39395689 39396285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3066 1 134 MAP Kinase Kinase Kinase AT3G46920 34.074 3.93e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3066 - - mtr:MTR_5g088120 408.297