Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3065 ATGGAGAGAGTCAAGCTCATGATTACCTATGGTGGAAAAATCCAACCTAGGCTTACTGCTCTTCATGATCATCGTCGTTATTCCTACATCGGTGGAGACAATAAAATCATCACCGTCGATCGTAATATCAACTTCTCTGACCTCATGGCAAAGCTTTCCACGTTCATGTTTTCCGATGTTTGCTTCAAGTATCAACTACTTGGTGAAGATTTGGATGCTTTGATCCCAGTTTATAACGAAGAAGATCTCAATCATATGATGTTCGAGTATGATCGTATGTGTCGCTTTTCACAAAAGCCTGCATGGTTGAGGGTCTTCCTCTTCCCGGTCCCTATTAACAACAACAAGGCATCTTTTGATTCTTTGGCTTCCGTCGACTCGCTCAATTCCGTTCAAGTTTTTCCTTTTGAAGAATATTCATCTCCTCCTACTACGCCTCCACATCCGTTCATGGCGACTAAGGACACGGTTACAAAAGCTGAGATGAAGAAATTTTGCGGAATACATGTTGTGAATGATGAATTTGAAGATATTCTAAAATTATATTTGAAGCGCAATTTTTCTAAGGTGAAGGACTTTCAAGGACTGCATGTCGTGAACGATGAATTTGAAGATATTCTAAAATCGTTTTGGAAGCGTTGCTTTTTGAAGCCTAATATAGTTTTCTAA 669 0.3946 MERVKLMITYGGKIQPRLTALHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFSDVCFKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPPHPFMATKDTVTKAEMKKFCGIHVVNDEFEDILKLYLKRNFSKVKDFQGLHVVNDEFEDILKSFWKRCFLKPNIVF* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3065 222 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 3 159 - -
Mtr5g3065 222 Gene3D - 28 109 - -
Mtr5g3065 222 SUPERFAMILY CAD & PB1 domains 24 110 - -
Mtr5g3065 222 CDD PB1_UP2 7 108 - -
Mtr5g3065 222 PANTHER OS05G0427100 PROTEIN-RELATED 3 159 - -
Mtr5g3065 222 Pfam PB1 domain 27 109 IPR000270 GO:0005515
Mtr5g3065 222 SMART PB1_new 22 110 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3065 Mtr-Chr5 39392875 39393543 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3065 3 110 MAP Kinase Kinase Kinase AT1G79570 40.000 1.97e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3065 - - mtr:MTR_5g488200 432.95