Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3063 ATGGTGAGGATCAGAGGAGGAGAGCAGAGGAAACGTGTTGATGAGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCAGCTCTTTCTGATGCTCAAACTCCAAAACCTATCAATCATGTTGAGAAGCTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTAGAGCTCCTTCTGTTCAGAAATCAAACGGTTCTGGAAACTTCAATCTGAAGAATAAGATGCCATCACCGCGCTCTCGAAAGCCAGGCCCCAAGCGCAACAGAAACACAAATGGCACGCCTCACTTTCCTGTGGCGACGATGCCTTATCCTAATGGCGAGAATCCTAAGCATGTATCCCCGGCAGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCATTGATGCCAAACATGTTCAGCCTCCGGTGCAAGAAGATCTGAATGCTTATGCTGTTAATTATCCAAATGGAAGGCCAAATATCCAAGAACAAGGTGACCATGTGAATCATGGTCGGCATCATCAAAGACCTTTTCCTGCCAAGGCAAACATGCCTATGCAACACAAAAGCATGGAAGGAAGAAAAAGTATACAATCATCCCTCCTTCAAATTGATTTAAATGAGTCGGCTTCAGCCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCAATATCGATGAGTCAGGTCATGCCGTTGCAATTCTAAACTCTAATGATAATAGCGTCGAAACTCTAAACTCTAACGAAAATAACTTAATTCAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAAGATGAACACAAGTTGTTTTTGAAGGGGCTGAAAAAACATGGAAAGGGATGCTGGAAAGATATTTCAAAAGAATTCGTGGTGACAAAAACTCCAACTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATATAGAGAAGAAGGAGAAAAAGAGAAAAAGTATTCACGACACAACCTTAAACAAGAATGACACATTGGTTACTGTCGCTGTTGAACAGCGAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTCCTCAAGGAATGCAACAGACACAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCAGTTCTACAATTCCTTCGGTTCAGCAACAAAATGAGCTTACTCCTGTAGTCACTGCTCCTATGGAACAACAACATGAGACTCCTGCCATCTTAAACAACAAGGACAATGAAAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGTGCAACTTGTTGGCAAAAGAACTTTGA 1386 0.4286 MVRIRGGEQRKRVDEKSVDVPVLVVGTKSSPALSDAQTPKPINHVEKLSVPSVGQVAPRAPSVQKSNGSGNFNLKNKMPSPRSRKPGPKRNRNTNGTPHFPVATMPYPNGENPKHVSPAAAGQGFTPPAHAIDAKHVQPPVQEDLNAYAVNYPNGRPNIQEQGDHVNHGRHHQRPFPAKANMPMQHKSMEGRKSIQSSLLQIDLNESASAQDPSEHSMEQQQEKTGTNIDESGHAVAILNSNDNSVETLNSNENNLIQAESVPEESHAPRKGHWTEDEHKLFLKGLKKHGKGCWKDISKEFVVTKTPTQIASHAQKYFIHQNVKDIEKKEKKRKSIHDTTLNKNDTLVTVAVEQRDEIPSVELQSVIPPQGMQQTQTQQNEISPMLCLLPISSTIPSVQQQNELTPVVTAPMEQQHETPAILNNKDNENLQTQLVLLYPIGSTLPDMNKLEKMCNLLAKEL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3063 461 ProSiteProfiles Myb-like domain profile. 266 318 IPR001005 -
Mtr5g3063 461 MobiDBLite consensus disorder prediction 1 99 - -
Mtr5g3063 461 Pfam Myb-like DNA-binding domain 271 318 IPR001005 -
Mtr5g3063 461 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 272 321 IPR006447 GO:0003677
Mtr5g3063 461 SMART sant 270 320 IPR001005 -
Mtr5g3063 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 270 322 IPR017930 -
Mtr5g3063 461 MobiDBLite consensus disorder prediction 1 18 - -
Mtr5g3063 461 PANTHER TRANSCRIPTION FACTOR SRM1 188 422 - -
Mtr5g3063 461 PANTHER TRANSCRIPTION FACTOR KUA1 188 422 - -
Mtr5g3063 461 MobiDBLite consensus disorder prediction 206 226 - -
Mtr5g3063 461 MobiDBLite consensus disorder prediction 59 78 - -
Mtr5g3063 461 SUPERFAMILY Homeodomain-like 270 322 IPR009057 -
Mtr5g3063 461 Gene3D - 272 323 - -
Mtr5g3063 461 CDD SANT 274 318 IPR001005 -
Mtr5g3063 461 ProSiteProfiles SANT domain profile. 269 322 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3063 Mtr-Chr5 39382881 39386440 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g3063 Myb_DNA-binding 8.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3063 - K18757 mtr:MTR_5g088060 883.248