Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3062 ATGGAAGGAAGAAAAAGTATACAATTACCCCTCCTTCAAATTGATTTAAATGGGCCGGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCATTGAGTCGGGTGGTGCCGTTGCAATTCTAAACTCTAATGATAATAACGTCGCAACTCTAAACTCTGACGAAAATAACTTAATTCAAGCTGAGTCAGGACCAGAAGAAAGTCATCCCCCAGGGAGAGTACAGAGAAAAAGTATACATTGGACAGATGATGAACACAAGTTGTTTTTGAAGGGGCTGAAAAAACATGGAAAGGGACGCTGGAAAGATATTTCAAAAGAATTCGTGGTGACAAAAACTCCAACTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATATAGAGAAGAAGGAGAAAAAGAGAAAAAGTATTCACGACACAACCTTAAACAAGAATGACACATTGGTTACTGTCGCTGTTGAACAGCGAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTCCTCAAGGAATGCAACAGACACAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCAGTTCTACAATTCCTTCGGTTCAGCAACAAAATGAGCTTACTCCTGTAGTCACTGCTCCTATGGAACAACAACATGAGACTCCTGCCATCTTAAACAACAAGGACAATGAAAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGTGCAACTTGTTGGCAAAAGAACTTTGA 837 0.4038 MEGRKSIQLPLLQIDLNGPASVQDPSEHSMEQQQEKTGTDIIESGGAVAILNSNDNNVATLNSDENNLIQAESGPEESHPPGRVQRKSIHWTDDEHKLFLKGLKKHGKGRWKDISKEFVVTKTPTQIASHAQKYFIHQNVKDIEKKEKKRKSIHDTTLNKNDTLVTVAVEQRDEIPSVELQSVIPPQGMQQTQTQQNEISPMLCLLPISSTIPSVQQQNELTPVVTAPMEQQHETPAILNNKDNENLQTQLVLLYPIGSTLPDMNKLEKMCNLLAKEL* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3062 278 PANTHER TRANSCRIPTION FACTOR KUA1 4 239 - -
Mtr5g3062 278 Coils Coil 264 278 - -
Mtr5g3062 278 ProSiteProfiles SANT domain profile. 91 139 IPR017884 -
Mtr5g3062 278 Pfam Myb-like DNA-binding domain 91 135 IPR001005 -
Mtr5g3062 278 PANTHER TRANSCRIPTION FACTOR SRM1 4 239 - -
Mtr5g3062 278 Gene3D - 89 140 - -
Mtr5g3062 278 SUPERFAMILY Homeodomain-like 84 139 IPR009057 -
Mtr5g3062 278 ProSiteProfiles Myb-like domain profile. 83 135 IPR001005 -
Mtr5g3062 278 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 138 IPR006447 GO:0003677
Mtr5g3062 278 CDD SANT 91 135 IPR001005 -
Mtr5g3062 278 MobiDBLite consensus disorder prediction 1 39 - -
Mtr5g3062 278 SMART sant 87 137 IPR001005 -
Mtr5g3062 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 139 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3062 Mtr-Chr5 39376547 39377794 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g3062 Myb_DNA-binding 8.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3062 - - mtr:MTR_5g088010 455.677