Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3055 ATGAGTTCACAAGAGAACAAAGAATGTTTGCCCCCACCACCTCCCATTGTTCCACCCAATGTTAAACCAATAAAGATAGAACAGGAGCATTTAAAGAAGAAGCTTCCTACTAAGGCTCCAATGGCTAGGCGTGGCCTAGGGACGAAGGGAGCTAAACTGCCTTTGTTAACAAATCACTTTGAAGTGAATGTTGCTAACACAAATAGGGTTTTCTTTCAGTACAGTGTTGCTTTGTTTTATGAAGACGGACGTCCTGTTGAAGGGAAAGGCGCCGGGAGGAAGATAATTGACAAAGTTCAAGAAACATATGATTCCGAGCTTAATGGAAAAGACCTTGCTTATGACGGGGAGACCCTGTTCACAATCGGCTCTCTAGCTCAGAAAAAGCTCGAGTTCATTGTTGTTGTTGAAGATGTCGCTTCAAACAGGAACAATGCGAACACCAGCCCTGATAAGAAGAGGATAAGAAAATCATACCGTTCGAAGACTTATAAAGTTGAAATCAACTTTGCTAAGGAAATTCCTCTGCAGGCCATTGCCAATGCCTTAAAGGGGCATGAAGCTGAGAATTATCAAGAAGCCATTAGGGTTCTTGATATTATCTTGAGACAACATTCTGCCAAACAGGGCTGTCTGCTTGTGCGCCAAAATTTCTTTCACAACGACCCAAATAATTTGAATGATGTTGGAGGTGGTGTACTTAGTTGCAAAGGGCTGCATTCCAGCTTTAGAACCACACAAAGTGGATTGTCTCTGAACATAGATGTGTCGACAACCATGATTGTACGTCCTGGGCCTGTGGTTGACTTCCTAATTGAAAATCAAAATGTGAGAGATCCTTTCAGTCTTGACTGGAATAAGGCTAAAAGGACCCTCAAGAATTTGAGGATCACAGCTAAACCATCTAACCAAGAGTACAAGATAACCGGGCTGAGTGAATTGTCGTGCAAAGACCAGCTGTTTACCATGAAGAAGAGAGGTGCTGTGGCTGGAGAGGATGATACAGAAGAGATCACGGTTTATGATTATTTCGTTCATCGGCGAAAAATTGATCTACAGTACTCTGCTGGTCTTCCATGTATTAATGTTGGGAAGCCAAAACGACCTACTTATATCCCAATTGAGCTTTGCTCATTGATATCCCTGCAACGATACACCAAAGCCCTCTCCACATCTCAACGATCCTCCCTTGTGGAAAAGTCGAGGCAGAAGCCTGTAGAACGGATGAGGGTCTTGTCTAATGCGTTGAAAGCAAGCAACTATGGCTCTGAACCAATGCTACGTAACTGTGGCATTTCAATAACATCCGAGTTCACCCAAGTTGATGGGAGGGTTTTGCAGGCTCCACGGTTGAAGTTTGGGAATGAAGATTTCAATCCCAGGAATGGGAGGTGGAACTTCAATAATAAGAAATTTGTAGAACCTGTTAGCTTAGGAAATTGGTCTGTGGTGAACTTTTCTGCTCGCTGTGATGTGCGAGGACTTGTGAGGGATCTAATAAAATGTGGAGGAATGAAAGGAATTCTTGTCGAACAACCTAAAGATGTAATTGAAGAAAATCGTCAGTTTAAAGGAGAACCACCTGTGTTTAGAGTTGAGAAGATGTTCGCGGATGTGTTAAAACTCTCGAAGCGTCCTAGCTTTCTGCTTTGTCTGCTTCCTGAGAGGAAGAACTCTGATCTTTATGGTCCATGGAAGAAGAAGAATCTTGCGGAGTTTGGAATTGTTACCCAGTGCATAGCTCCTACCAGGGTGAACGACCAGTATCTGACCAATGTTTTGCTGAAGATCAATGCAAAGCTTGGTGGGATGAATTCTTGGTTAGGCGTTGAACACTCTCGATCCATCCCTATTGTGTCGAAAGTTCCTACTCTCATTTTGGGCATGGATGTTTCTCATGGTTCACCTGGGCAACCTGACATTCCTTCAATTGCTGCGGTCGTAAGCTCGAGGAAATGGCCCCTGATATCTAAATACAGGGCATGTGTCCGAACTCAGGGTTCGAAGGTTGAGATGATTGACAATCTGTTCAAGCCAGTGTCTGATAAGGAAGATGAAGGAATTATAAGGGAACTTTTGCTTGATTTCTTTCATAGTTCTGAAGAGAGACGACCAGAGAATATAATCATTTTCAGGGATGGTGTTAGTGAGTCTCAGTTCAACGAAGTGTTGAACGTTGAACTCAGCCAAATCATCGAGGCTTGTAAATTTCTTGATGAAAATTGGAACCCCAAGTTTATGGTGATTGTTGCCCAGAAGAATCATCACACAAAATTCTTCCAACCTCGATCTCCAGACAATGTGCCACCTGGAACTGTTGTGGACAGCAAAATTTGCCATCCTAGGAATTATGATTTTTATATGTGTGCTCATGCTGGAATGATTGGTACAAGCAGACCAACACATTATCACGTTCTTTTGGATGAGATTGGTTTTTCTCCAGATGATTTACAGGAGCTTGTGCACTCTCTATCTTATGTTTATCAGCGGAGCACCACTGCTATTTCTGTCGTTGCTCCAATCTGCTATGCACACTTGGCTGCATCTCAAGTTGGACAGTTCATGAAGTTTGAAGATAAGTCTGAAACTTCCTCGAGCCAAGGTGGTATCAATGCCTCCCTCATCCCACAGTTGCCAAACTTACATAAGAGAGTCTGCAATTCCATGTTTTTTGTCTGA 2679 0.4293 MSSQENKECLPPPPPIVPPNVKPIKIEQEHLKKKLPTKAPMARRGLGTKGAKLPLLTNHFEVNVANTNRVFFQYSVALFYEDGRPVEGKGAGRKIIDKVQETYDSELNGKDLAYDGETLFTIGSLAQKKLEFIVVVEDVASNRNNANTSPDKKRIRKSYRSKTYKVEINFAKEIPLQAIANALKGHEAENYQEAIRVLDIILRQHSAKQGCLLVRQNFFHNDPNNLNDVGGGVLSCKGLHSSFRTTQSGLSLNIDVSTTMIVRPGPVVDFLIENQNVRDPFSLDWNKAKRTLKNLRITAKPSNQEYKITGLSELSCKDQLFTMKKRGAVAGEDDTEEITVYDYFVHRRKIDLQYSAGLPCINVGKPKRPTYIPIELCSLISLQRYTKALSTSQRSSLVEKSRQKPVERMRVLSNALKASNYGSEPMLRNCGISITSEFTQVDGRVLQAPRLKFGNEDFNPRNGRWNFNNKKFVEPVSLGNWSVVNFSARCDVRGLVRDLIKCGGMKGILVEQPKDVIEENRQFKGEPPVFRVEKMFADVLKLSKRPSFLLCLLPERKNSDLYGPWKKKNLAEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGMNSWLGVEHSRSIPIVSKVPTLILGMDVSHGSPGQPDIPSIAAVVSSRKWPLISKYRACVRTQGSKVEMIDNLFKPVSDKEDEGIIRELLLDFFHSSEERRPENIIIFRDGVSESQFNEVLNVELSQIIEACKFLDENWNPKFMVIVAQKNHHTKFFQPRSPDNVPPGTVVDSKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDKSETSSSQGGINASLIPQLPNLHKRVCNSMFFV* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3055 892 SMART Piwi_a_2 548 856 IPR003165 GO:0003676
Mtr5g3055 892 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 891 - -
Mtr5g3055 892 CDD Piwi_ago-like 425 848 IPR045246 -
Mtr5g3055 892 SUPERFAMILY PAZ domain 259 421 IPR036085 GO:0005515
Mtr5g3055 892 CDD PAZ_argonaute_like 264 380 - -
Mtr5g3055 892 MobiDBLite consensus disorder prediction 1 20 - -
Mtr5g3055 892 Pfam Argonaute linker 2 domain 407 453 IPR032472 -
Mtr5g3055 892 ProSiteProfiles Piwi domain profile. 548 856 IPR003165 GO:0003676
Mtr5g3055 892 Gene3D - 445 608 - -
Mtr5g3055 892 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 6 891 - -
Mtr5g3055 892 Pfam N-terminal domain of argonaute 53 202 IPR032474 -
Mtr5g3055 892 SUPERFAMILY Ribonuclease H-like 542 854 IPR012337 -
Mtr5g3055 892 SMART DUF1785_2 212 264 IPR014811 -
Mtr5g3055 892 Pfam Argonaute linker 1 domain 214 262 IPR014811 -
Mtr5g3055 892 ProSiteProfiles PAZ domain profile. 289 381 IPR003100 GO:0005515
Mtr5g3055 892 Gene3D paz domain 258 385 - -
Mtr5g3055 892 Pfam PAZ domain 268 397 IPR003100 GO:0005515
Mtr5g3055 892 Gene3D - 616 892 IPR036397 GO:0003676
Mtr5g3055 892 Pfam Piwi domain 549 856 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3055 Mtr-Chr5 39319628 39326522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3055 43 891 Eukaryotic Initiation Factors Gene Family AT5G43810 34.257 2.63e-151 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3055 K11593 - gmx:100779439 1419.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2500 3 38953340 38961528 Mtr5g3055 5 39319628 39326522 PCT