Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3054 ATGGGTTCACAGGAGAACGAAGAATGTTTACCCCCGCCACCTCCCATTGTCCCAGCAGACATTGAACCAATCAAGATTGAGCCGCAGATAGTTAAGAAAAAACTTCCCACCAAGGTTCCAATGGCAAGACGTGGACTTGGGTCTAAGGGAGCTAAACTGCCTCTGCTTACTAATCACTTTAAAGTGAATGTTACCAACACTGATGGTTATTTCTTTCAGTACAGTGTTGCTCTTTTTTATGAAGATGGACGCCCTGTTGAAGGAAAGGGTGCTGGTAGGAAGATACTTGATAGAGTTCAAGAAACTTATGGTTCCGAGCTTAACGGGAAAGACCTTGCTTATGATGGGGAGAAGACTCTGTTTACTATTGGCTCACTTGCTCAGAACAAGCTTGAATTTACTGTTGTTCTTGAAGATGTAACTTCAAACAGGAACAACGGTAATGCTAGCCCTGATGGACACGGAAGTCCAAATGATACTGATAGGAAGAGGTTGAAAAAATCACACCGATCAAAGACCTACAAAGTTGAAATCAGCTTTGCCTCAAAGATCCCTCTGCAGGCCATCGCCAATGCCTTAAAAGGGCATGAAACTGAGAATTATCAAGAAGCGATTAGGGTTCTTGACATTATCTTGAGGCAACATGCTGCCAAACAGGGCTGTCTGCTTGTCCGCCAAAACTTTTTCCACAATGATCCGAAAAATTTCACAGATGTAGGAGGTGGTGTTCTTGGATGCAGAGGGCTGCATTCTAGCTTCAGGACCACACAAAGTGGGCTGTCTTTGAATATAGACGTGTCAACAACCATGATTGTCCATCCTGGGCCTGTGGTTGATTTCTTGATTGCAAACCAGAATGTGAGAGATCCTTTCAGTCTTGACTGGAATAAGGCTAAAAGGACTCTAAAGAATTTGAGGATCACTACTAGCCCAACCAACCAAGAGTACAAAATTACTGGTTTAAGTGAAATGCCATGCAAGGACCAGCTGTTTACTCTGAAGAAGAGGGGTGCTGTTCCTGGAGAAGATGATACCGAGGAGATCACTGTTTATGATTATTTTGTCAACCGCAGAAAAATTTCTCTACAGTACTCAGCTGATCTGCCATGTATTAATGTGGGAAAGCCAAAGCGACCTACATTTGTCCCAGTTGAGCTTTGCTCATTGGTATCCCTTCAACGATATACCAAAGCCCTGTCCACACTCCAGAGATCCTCCCTTGTGGAAAAGTCTAGGCAGAAGCCTCAAGAGCGGATGAGGGTCTTGACGGATGCCTTAAAAACAAGTGACTATGGCTCTGAACCCATGCTACGTAACTGTGGAATTTCAATAACATCTGGGTTCACACAAGTTGATGGGAGGGTTTTGCAGGCTCCAAGGTTGAAGTTTGGGAATGGCGAAGACTTCAATCCCAGGAATGGTAGATGGAACTTCAACAACAAGAAAATTGTGCAACCTGTTAAAATAGAGAAATGGGCTGTGGTGAACTTTTCTGCGCGTTGTGATGTGCGAGGACTTGTGAGGGATCTGATAAAATGTGGAGGAATGAAAGGAATTCATGTTGAACAGCCTTTTGATTGCTTTGAAGAAAATGGCCAGTTTAGGCGTGCACCACCTCTGGTCCGTGTTGAAAAAATGTTTGAACATGTTCAGTCCAAACTACCTGGTGCTCCCAAGTTTCTTCTTTGTCTCCTTTCTGAGAGAAAGAACTCTGATCTTTATGGTCCATGGAAGAAAAAGAATCTTGCAGAGTTTGGAATTGTTACTCAGTGTATAGCTCCTACCAGGGTGAACGACCAGTATCTGACCAATGTTTTGCTGAAGATCAATGCAAAGCTTGGTGGCATGAATTCTCTTTTAGGCGTTGAACACTCTCCATCCATTCCCATTGTGTCAAAAGCTCCTACTCTAATTTTGGGCATGGATGTTTCTCATGGTTCACCTGGGCAAACTGAAATTCCCTCAATTGCTGCGGTCGTAAGCTCAAGGCAATGGCCCTTGATATCTAAATATAGGGCATGCGTCCGTACTCAGGGTGCTAAGGTTGAAATGATTGACAATCTGTTCAAGCCAGTGTCAGATACGGAGGATGAAGGAATAATAAGGGAGCTTTTGATTGATTTTTATAATAGTTCTGGGAACAGAAAACCAGACAATATCATAATTTTCAGGGATGGTGTCAGCGAGTCTCAGTTCAACCAAGTTTTGAACATTGAACTGAGCCAAATCATTGAGGCCTGCAAATTTCTTGATGAAAAGTGGAACCCCAAATTTCTGGTTATTGTTGCCCAGAAGAATCATCACACAAAGTTCTTCCAGCCTGGATCTCCGGATAATGTGCCTCCTGGTACTGTTGTGGACAACAAAATCTGTCATCCCCGGAATTATGATTTCTACATGTGTGCTCATGCTGGAATGATTGGTACCAGTAGGCCAACTCATTATCATGTCCTTTTGGATGAGATTGGCTTTTCTCCAGATGATCTTCAAGAGCTTGTGCACTCTCTCTCCTATGTTTATCAGCGGAGCACTACTGCCATCTCTGTTGTTGCTCCAATCTGCTATGCCCATTTGGCTGCTTCTCAAGTGGGACAGTTCATGAAGTTTGAAGACAAGTCTGAAACTTCATCTAGCCATGGTGGTAGCGGTCGTGATATCAATGCCTCTCCCATCCCACAGTTGCCCAAATTGATGGATAGTGTCTGCAACTCTATGTTCTTTGTTTGA 2727 0.4353 MGSQENEECLPPPPPIVPADIEPIKIEPQIVKKKLPTKVPMARRGLGSKGAKLPLLTNHFKVNVTNTDGYFFQYSVALFYEDGRPVEGKGAGRKILDRVQETYGSELNGKDLAYDGEKTLFTIGSLAQNKLEFTVVLEDVTSNRNNGNASPDGHGSPNDTDRKRLKKSHRSKTYKVEISFASKIPLQAIANALKGHETENYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFTDVGGGVLGCRGLHSSFRTTQSGLSLNIDVSTTMIVHPGPVVDFLIANQNVRDPFSLDWNKAKRTLKNLRITTSPTNQEYKITGLSEMPCKDQLFTLKKRGAVPGEDDTEEITVYDYFVNRRKISLQYSADLPCINVGKPKRPTFVPVELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMRVLTDALKTSDYGSEPMLRNCGISITSGFTQVDGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPVKIEKWAVVNFSARCDVRGLVRDLIKCGGMKGIHVEQPFDCFEENGQFRRAPPLVRVEKMFEHVQSKLPGAPKFLLCLLSERKNSDLYGPWKKKNLAEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGMNSLLGVEHSPSIPIVSKAPTLILGMDVSHGSPGQTEIPSIAAVVSSRQWPLISKYRACVRTQGAKVEMIDNLFKPVSDTEDEGIIRELLIDFYNSSGNRKPDNIIIFRDGVSESQFNQVLNIELSQIIEACKFLDEKWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVVDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDKSETSSSHGGSGRDINASPIPQLPKLMDSVCNSMFFV* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3054 908 Pfam Piwi domain 561 868 IPR003165 GO:0003676
Mtr5g3054 908 Pfam Mid domain of argonaute 470 519 IPR032473 -
Mtr5g3054 908 ProSiteProfiles PAZ domain profile. 299 391 IPR003100 GO:0005515
Mtr5g3054 908 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 907 - -
Mtr5g3054 908 Pfam Argonaute linker 2 domain 417 463 IPR032472 -
Mtr5g3054 908 Gene3D paz domain 268 395 - -
Mtr5g3054 908 ProSiteProfiles Piwi domain profile. 560 868 IPR003165 GO:0003676
Mtr5g3054 908 Gene3D - 627 908 IPR036397 GO:0003676
Mtr5g3054 908 SUPERFAMILY PAZ domain 269 431 IPR036085 GO:0005515
Mtr5g3054 908 MobiDBLite consensus disorder prediction 871 890 - -
Mtr5g3054 908 CDD PAZ_argonaute_like 274 390 - -
Mtr5g3054 908 Pfam PAZ domain 278 407 IPR003100 GO:0005515
Mtr5g3054 908 SUPERFAMILY Ribonuclease H-like 544 866 IPR012337 -
Mtr5g3054 908 SMART DUF1785_2 222 274 IPR014811 -
Mtr5g3054 908 CDD Piwi_ago-like 435 860 IPR045246 -
Mtr5g3054 908 Gene3D - 455 621 - -
Mtr5g3054 908 SMART Piwi_a_2 560 868 IPR003165 GO:0003676
Mtr5g3054 908 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 6 907 - -
Mtr5g3054 908 Pfam Argonaute linker 1 domain 224 271 IPR014811 -
Mtr5g3054 908 MobiDBLite consensus disorder prediction 142 171 - -
Mtr5g3054 908 Pfam N-terminal domain of argonaute 53 212 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3054 Mtr-Chr5 39310794 39318254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3054 43 907 Eukaryotic Initiation Factors Gene Family AT5G43810 34.509 8.81e-157 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3054 K11593 - gmx:100779439 1572.37