Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3050 ATGCAGGCTATCTGGTTGATGCTGTTGTTGTTGGTGAATACTGCATTTGGGAATAGAGACATTGATGCACTTCTTGAACTCAAGAAGGGTATTCAAAATGACCCTTTTGGATTAGTTCTTAATTCTTGGGATTCCAAGTCATTAGAATCTAATGGATGTCCTCAGAACTGGTATGGGATATTGTGTAGTGAAGGCAATGTTATATCCATCACTTTGGACAATGCTAGTTTGGTCGGAGAGTTCAATTTCCTTGCAATTAGTAACCTTCCAATGCTTCACAACTTGTCAGTTGTAAACAATCACTTCACAGGAAGTATGCTACATATTAGTCCAATGAAATCACTTAAATTTCTCGATTTGTCTCTCAACAAGTTCAACGGCTCGTTACCTCCTAGCTTCGTTGAATTGCGCAGTTTAGTGTATCTGAATCTTTCTTTGAATGAATTTAGTGGCACTGTTCCAAATGTGTTTCACAAACTTGACCAGTTGGAGTATTTAGATTTTCACAGTAATAGCTTTTCTGGCGATATTATGGAAATCTTTTATCAGATGGGAAGTGTGTTACATGTTGACTTAAGCAACAACAAGTTTTCTGGTGCATTGGATTTGGGACTTGGAGATGTCTCATTTCTATTCTCAATTCAACATTTGAATGTTAGTCACAATTCCTTGGTTGGTGAACTATTTGCTCATGATGGTATGCCATACCTTGACAATTTAGAAGTCTTTGATGCTAGTAATAATCAGCTAGTTGGTAATATACCTTCCTTCACGTTTGTCGTATCACTAAGGATTCTTCGGCTCGCATGCAATCAGTTGACAGGCTCATTGCCAGAAACTTTGTTGAAGGAAAGTTCAATGATGTTGTCTGAACTTGATCTTAGTCAAAACAAGCTTGAAGGTTTCATTGGAAGCATTACCTCAATGACTCTTAGGAAGCTTAATATATCTTCAAACAAATTATCAGGCCCATTACCTCTCAAAGTAAGTCATTGTGCCATCATAGATTTGAGTAACAACATGCTGTCAGGTAATTTGTCAAGGATCAAGTATTGGGGTAACTATGTGGAAGTTATTCAGTTAAGTAAAAACTCATTGTCCGGAACACTTCCAAACGAAACTTCTCAACTTTTACGGTTAACATCACTTAAGGTATCCAATAACTCATTGGAAGGTTTTCTCCCACCAGTTTTAGGAACATATCCAGAACTAAAAGAGATTGATCTTAGTCTTAACCGGCTTTCGGGGTTCCTCCTACCAACCCTTTTTGCCTCAACCAAATTGACTAATCTTAATCTCTCTAACAATATGTTTTCTGGTCCAATTCCTTTTGAACTTCAACTTCCAAATAATCTATTGGTTTCTGCTGAAAATTTTAGTTTGATGTATCTTGATCTTTCGAACAACAACTTGAGTGGAATTCTTTCTTCGAAAATTAAGGAGCTTCATAATTTGGTATATCTCAATCTATGTAACAACAAATTAGAAGGTACTATTCCTAATGATCTTCCAGATGAGTTAAGAGAACTCAATGTGTCCTTTAATAATTTTTCTGGGGTTGTACCTGATAACTTATCACAGTTTCCTGAATCAGCATTTCATCCTGGAAATACTATGCTGATATTTCCTAATTCTCATTTATCACCTAAAGATAGTTCCAATTCCAACCTAGGTTCGAGGTCACATGAGAAAACTTTCACTAGGAGTGTCTTGATTACATGTATAGTTACCGGTGTTTTTGTGATAGCTATAATGGCTGCCATGATTTATTATAGGATTCATCAGAAAAAAGGAAGTACTTCTAAACAAGATGCAACAACAAGTGACATCATCCAAGAGAGTACTTCTCCATCAAAGAGAAGAAATTTGGAGTCATTACCGCCTTCTCAAAGTGAAGATACCGGAAACATTAATCCAACTGTACAGAATCCTAAAGATCCGGAATTCATTAAGAACGAGGAAGGAACGTCTTCTCCAATGTCTATTATATCGGCTTCAAATCCTTCACCTTCTACAAGCCATCAGTTTGAGAATCCTGGCTCGCTCGAAGTATCCTCTCCGGATAAACTGGTTGGAGACTTGCATCTATTTGATGGATCTTTGATGCTTACTGCGGAAGAACTTTCGTGTGCTCCAGCCGAAGTTGTTGGTAGGAGTTGTCATGGAACACTTTACAAAGCTACACTTGAATCTGGTCATGTATTGGCTGTTAAATGGTTAAGAGAAGGAATAACTAAAGGAAAAAAGGAGTTGGCTAGGGAAATTAAGAAACTTGGGACAATCAAGCATCCAAACTTGGTTTCTTTTCTTGGTTGCTACTTAGGGCCAAAGGAGCATGAGAGATTGATTGTATCAAATTACATGAATGCACATTCTTTGGACATTTATCTCCACGAGGCTGATAAAAGAAATCTTCATCCTTTGTCTCTTGATGAAAGGCTCAGGGTGGCCGTAGAAGTGGCGCGATGTCTACTTTACCTACACACCGAGAAAGCCATACCTCATGGTAATCTCAAATCCACAAACATTCTACTAGAAACTCCCAACAGAAATGTATTGCTCACTGACTACAGCCTGCACCGAATACTTACCGCTGCTGGTACTTCGGAGCAAGTTTTGAATGCCGGTGCACTTGGTTACCGACCTCCCGAATTCACTAGATCAACCAAACCATGTCCTTCTTTGAAGAGTGACGTCTACGCATTCGGAGTTGTCTTGTTAGAGCTCCTAACAGGAAGAAAATCAGGAGAAGTCGTTTCGGGAATTCCTGGCATGGCTGAACTTACCGATTGGGTAAGATTCTTAGCTGAACACGGTCGCTCGAACCAATGCTTTGAAAATTCCCTTGTGGATAATGACAATGGAGAAGATTCATATAGGATTCTTGACGACATGCTTAAAGTGGCTATTAGATGCACCCTTTCAGCATCCGAGAGACCTGACATGAAAACAGTGTTTGATGATCTTTCAACAATAAAGGAGAGTTGA 2988 0.3869 MQAIWLMLLLLVNTAFGNRDIDALLELKKGIQNDPFGLVLNSWDSKSLESNGCPQNWYGILCSEGNVISITLDNASLVGEFNFLAISNLPMLHNLSVVNNHFTGSMLHISPMKSLKFLDLSLNKFNGSLPPSFVELRSLVYLNLSLNEFSGTVPNVFHKLDQLEYLDFHSNSFSGDIMEIFYQMGSVLHVDLSNNKFSGALDLGLGDVSFLFSIQHLNVSHNSLVGELFAHDGMPYLDNLEVFDASNNQLVGNIPSFTFVVSLRILRLACNQLTGSLPETLLKESSMMLSELDLSQNKLEGFIGSITSMTLRKLNISSNKLSGPLPLKVSHCAIIDLSNNMLSGNLSRIKYWGNYVEVIQLSKNSLSGTLPNETSQLLRLTSLKVSNNSLEGFLPPVLGTYPELKEIDLSLNRLSGFLLPTLFASTKLTNLNLSNNMFSGPIPFELQLPNNLLVSAENFSLMYLDLSNNNLSGILSSKIKELHNLVYLNLCNNKLEGTIPNDLPDELRELNVSFNNFSGVVPDNLSQFPESAFHPGNTMLIFPNSHLSPKDSSNSNLGSRSHEKTFTRSVLITCIVTGVFVIAIMAAMIYYRIHQKKGSTSKQDATTSDIIQESTSPSKRRNLESLPPSQSEDTGNINPTVQNPKDPEFIKNEEGTSSPMSIISASNPSPSTSHQFENPGSLEVSSPDKLVGDLHLFDGSLMLTAEELSCAPAEVVGRSCHGTLYKATLESGHVLAVKWLREGITKGKKELAREIKKLGTIKHPNLVSFLGCYLGPKEHERLIVSNYMNAHSLDIYLHEADKRNLHPLSLDERLRVAVEVARCLLYLHTEKAIPHGNLKSTNILLETPNRNVLLTDYSLHRILTAAGTSEQVLNAGALGYRPPEFTRSTKPCPSLKSDVYAFGVVLLELLTGRKSGEVVSGIPGMAELTDWVRFLAEHGRSNQCFENSLVDNDNGEDSYRILDDMLKVAIRCTLSASERPDMKTVFDDLSTIKES* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3050 995 Pfam Protein tyrosine and serine/threonine kinase 714 935 IPR001245 GO:0004672|GO:0006468
Mtr5g3050 995 Gene3D Ribonuclease Inhibitor 182 354 IPR032675 -
Mtr5g3050 995 SUPERFAMILY L domain-like 21 305 - -
Mtr5g3050 995 MobiDBLite consensus disorder prediction 600 645 - -
Mtr5g3050 995 Gene3D Ribonuclease Inhibitor 455 533 IPR032675 -
Mtr5g3050 995 Pfam Leucine rich repeat N-terminal domain 18 63 IPR013210 -
Mtr5g3050 995 Gene3D Transferase(Phosphotransferase) domain 1 788 995 - -
Mtr5g3050 995 SMART LRR_bac_2 377 398 - -
Mtr5g3050 995 SMART LRR_bac_2 237 257 - -
Mtr5g3050 995 SMART LRR_bac_2 504 524 - -
Mtr5g3050 995 SMART LRR_bac_2 260 280 - -
Mtr5g3050 995 SUPERFAMILY Protein kinase-like (PK-like) 714 989 IPR011009 -
Mtr5g3050 995 MobiDBLite consensus disorder prediction 654 682 - -
Mtr5g3050 995 ProSiteProfiles Protein kinase domain profile. 710 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3050 995 Gene3D Ribonuclease Inhibitor 17 181 IPR032675 -
Mtr5g3050 995 PANTHER OS07G0626500 PROTEIN 1 993 - -
Mtr5g3050 995 MobiDBLite consensus disorder prediction 597 685 - -
Mtr5g3050 995 Pfam Leucine Rich repeat 308 323 IPR001611 GO:0005515
Mtr5g3050 995 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 1 993 - -
Mtr5g3050 995 PRINTS Leucine-rich repeat signature 461 474 - -
Mtr5g3050 995 PRINTS Leucine-rich repeat signature 482 495 - -
Mtr5g3050 995 SUPERFAMILY L domain-like 334 528 - -
Mtr5g3050 995 Gene3D Ribonuclease Inhibitor 355 454 IPR032675 -
Mtr5g3050 995 Gene3D Phosphorylase Kinase; domain 1 709 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3050 Mtr-Chr5 39264140 39269404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3050 69 992 Receptor kinase-like Gene Family AT5G07280 29.990 9.98e-77 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Mtr5g3050 PK_Tyr_Ser-Thr 1.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3050 - - cam:101512473 1556.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3050 5 39264140 39269404 Mtr5g3050 5 39264140 39269404 ECH