Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3023 ATGACTAGAACTAGTTGTAGCAGTAAATTCATTACACTCTTGTTGATTATTTCCTTCTTGCATAGTGGTTTGACTCTTACCTCTGATGGGTTGATACTGTTGTCACTCATGACACACTGGACTTTTATTCCTCCTTTTATCAAATCTACCTGGAATGCCTCTGATTCAACTCCATGCTCATGGGTTGGTGTTCAATGTGACTATAATCATCATAATGTCATTTCTCTTAACCTCACTAGTCGTGGGATTTTTGGTCAACTTGGGACAGAAATTTTGAACCTTCATCACTTGCAGACCCTTGTATTGTTTGGAAATGGTTTCTCAGGAAAAGTGCCTTCAGAGTTAAGCAACTGTAGTTTGCTTGAGTATTTAGACCTTTCTGAGAATAGATTCAGTGGAAAGATACCATCTAGTTTGAATAAGTTACAACTTTTACGGTTTATGAGTCTCTCATCCAATCTGCTTATCGGTGAAATTCCAGATTCCTTGTTTAAAATTCCATCCTTGGAAGAAGTAAACCTGCACAGTAACCTTCTTAGTGGTCCTATCCCGACCAATATTGGAAACTTGACTCATCTATTGAGGTTGTATCTATATGGTAATCAGTTGTCAGGGACTATTCCTTCATCTCTTGGTAATTGCAGTAAATTAGAGGACCTTGAATTGTCTTTCAACCGACTGAGAGGCAAAATTCCGGTCAGTGTTTGGAGAATTTCAAGTCTTGTGAACATCTTGGTTCACAACAACAGCCTCTCTGGGGAACTGCCTTTCGAGATGACAAAGCTCAAGTATCTAAAAAATATCTCATTGTTTGATAATCAGTTCTCAGGAGTCATACCTCAAAGCTTAGGAATCAACAGCAGAATAGTGAAGTTGGACGGTATGAATAACAAGTTCAGCGGTAATATCCCACCCAATCTTTGCTTTGGAAAGCATTTGTCAGTGCTCAATATGGGAATCAATCAACTTCAAGGTGGCATACCTTCTGATCTAGGAAGATGTGAAACTCTGATGAGGTTGATTATCAATGAAAATAATTTCACCGGGTCTCTTCCTGATTTTGAGAGTAATTTGAACCTGAACTACATGGACTTGAGCAAGAACAATATCAGTGGACCAGTTCCATCAAGTTTGGGAAATTGCAAAAATCTCACATACAGTAATTTGTCGAGGAACAATTTTGCAGGGCTCATATCGACAGAGTTAGGTAAGCTTGTGAGTCTTGTGATTTTGGATCTTTCTCACAACAACTTGGAAGGTCCTTTACCACTCCAACTGTCAAATTGTTCTAAAATGGATCAGTTTGATGTGGGATTCAATTTCCTAAATGGAACACTCCCATCAAGTTTGAGAAGTTGGAGAAATATAACCACATTGATTTTAAGAGAAAATTACTTCACTGGAGGTATCCCAGAGTTTTTGGCAGAATTTACCAACCTCCGCGAGTTACATCTTGGTGGAAATTTGTTTGGAGGCAAAATTCCTCGATCGATGGGAACATTGCATAATTTGTTCTATGGACTGAATCTGAGTGGTAATGGATTGACAGGTGGCATTCCTTCGGAAATTGGTTTACTCGGACTGCTGCAAAGTCTAGATATATCCTTAAACAATTTAACAGGAAGCATAGATGCTCTTGGAGGTCTTGTTTCATTAATTGAGGTCAATATTTCTTTCAATCTCTTCAATGGATCTGTACCAACAGGTCTAATGAGGTTATTGAATTCCTCACCATCATCATTCATGGGTAATCCTTTCCTATGTGTAAGTTGTTTGAATTGCATTATAACTAGTAATGTAAATCCATGTGTCTACAAATCAACTGATCATAAAGGTATCAGTTATGTTCAAATTGTAATGATAGTACTTGGATCCTCAATATTGATTTCTGCTGTGATGGTGATAATATTTCGAATGTATCTCCATAGAAATGAATTGAAAGGGGCCTCTTATCTTGAGCAACAGTCTTTTAATAAAATAGGAGACGAACCTAGTGATTCCAATGTAGGGACCCCATTAGAAAATGAGTTGTTTGACTATCATGAGCTAGTTTTGGAGGCTACAGAGAACCTAAATGATCAGTATATTATTGGAAGAGGAGCACATGGTATTGTGTACAAAGCCATAATTAATGAGCAGGCTTGTGCTGTAAAGAAGTTTGAATTTGGATTGAACAGGCAAAAGTGGCGAAGTATCATGGACAACGAAATTGAAGTCCTTAGGGGCCTTAGGCATCAAAATTTGATCAAATGTTGGAGCCACTGGATTGGAAATGACTATGGTTTAATCATATATAAATTCATTGAAAATGGAAGCCTTTATGAAATTTTGCATGAAATGAAACCCCCACCACCCTTAAGGTGGAGTGTTCGGTTTAATATAGCTGTTGGAATTGCTCAAGGACTAGCTTATCTGCATTATGATTGTGATCCACCAATACTGCACCGAGACATCAAACCAAAGAACATACTTGTTGATGACAATTTGGTGCCTGTTATAGCTGATTTTAGCACTGCCCTATGCAAGAAGTTGTTAGAGAATTCACATAGTTATTCTGAAACCAGAAAATTGCTTTCATTGCGCGTTGTTGGTACCCCTGGCTATATTGCACCAGAAAATGCATATAAAGTAGTGCCGGGAAGAAAGTCTGACGTATATAGTTACGGAGTTGTTTTGCTTGAGCTAATAACCAGAAAGAAAATATTACTTCCCTCTTTGAATAATGATGCGGAGGAGATCCACATAGTGACCTGGGCTAGATCTTTATTTATGGAAACAAGTAAAATTGAGAAGATTGTTGATCCATTTCTTTCAAGTGCATTTCCCAATTCAGCAGTGCTAGCCAAGCAAGTCAATGCAGTGCTTTCATTGGCATTACAATGCACAGAGAAGGATCCACGAAGGAGGCCGACCATGAAAGATGTTATTGACTTTTATAATAACTACCTGTTTAAGCTAAGGTGTGATGAAGTTCAATATGGTATAGGACTTTCAATTAAACTGATGGGAAATGGTAAATTGCTGGCTCAAAAGGTTGTTGGCGTATTGAATCTAGTTCTTCCAAAAATAACCTATGCTTGGCCAATTTTGATCTTCCGTCCCTCTATCACCGGTCCAATACTTACCAAACCTTTCAATTGGTTTTTCCTATCACGTTGGGGTCAATATAGACACCTGCAGAAATCCTTGTATTCACAGCGCAAGTCACACTACTTTATCAACACCAATCAAACAGAGGCCACTGTTGAACGTAGTGAATAG 3261 0.3824 MTRTSCSSKFITLLLIISFLHSGLTLTSDGLILLSLMTHWTFIPPFIKSTWNASDSTPCSWVGVQCDYNHHNVISLNLTSRGIFGQLGTEILNLHHLQTLVLFGNGFSGKVPSELSNCSLLEYLDLSENRFSGKIPSSLNKLQLLRFMSLSSNLLIGEIPDSLFKIPSLEEVNLHSNLLSGPIPTNIGNLTHLLRLYLYGNQLSGTIPSSLGNCSKLEDLELSFNRLRGKIPVSVWRISSLVNILVHNNSLSGELPFEMTKLKYLKNISLFDNQFSGVIPQSLGINSRIVKLDGMNNKFSGNIPPNLCFGKHLSVLNMGINQLQGGIPSDLGRCETLMRLIINENNFTGSLPDFESNLNLNYMDLSKNNISGPVPSSLGNCKNLTYSNLSRNNFAGLISTELGKLVSLVILDLSHNNLEGPLPLQLSNCSKMDQFDVGFNFLNGTLPSSLRSWRNITTLILRENYFTGGIPEFLAEFTNLRELHLGGNLFGGKIPRSMGTLHNLFYGLNLSGNGLTGGIPSEIGLLGLLQSLDISLNNLTGSIDALGGLVSLIEVNISFNLFNGSVPTGLMRLLNSSPSSFMGNPFLCVSCLNCIITSNVNPCVYKSTDHKGISYVQIVMIVLGSSILISAVMVIIFRMYLHRNELKGASYLEQQSFNKIGDEPSDSNVGTPLENELFDYHELVLEATENLNDQYIIGRGAHGIVYKAIINEQACAVKKFEFGLNRQKWRSIMDNEIEVLRGLRHQNLIKCWSHWIGNDYGLIIYKFIENGSLYEILHEMKPPPPLRWSVRFNIAVGIAQGLAYLHYDCDPPILHRDIKPKNILVDDNLVPVIADFSTALCKKLLENSHSYSETRKLLSLRVVGTPGYIAPENAYKVVPGRKSDVYSYGVVLLELITRKKILLPSLNNDAEEIHIVTWARSLFMETSKIEKIVDPFLSSAFPNSAVLAKQVNAVLSLALQCTEKDPRRRPTMKDVIDFYNNYLFKLRCDEVQYGIGLSIKLMGNGKLLAQKVVGVLNLVLPKITYAWPILIFRPSITGPILTKPFNWFFLSRWGQYRHLQKSLYSQRKSHYFINTNQTEATVERSE* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3023 1086 Gene3D Ribonuclease Inhibitor 28 183 IPR032675 -
Mtr5g3023 1086 SUPERFAMILY Protein kinase-like (PK-like) 680 977 IPR011009 -
Mtr5g3023 1086 Gene3D Ribonuclease Inhibitor 286 359 IPR032675 -
Mtr5g3023 1086 SUPERFAMILY RNI-like 268 576 - -
Mtr5g3023 1086 Pfam Protein kinase domain 695 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3023 1086 Gene3D Ribonuclease Inhibitor 360 595 IPR032675 -
Mtr5g3023 1086 PANTHER OS08G0446200 PROTEIN 4 989 - -
Mtr5g3023 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Mtr5g3023 1086 SMART LRR_typ_2 142 166 IPR003591 -
Mtr5g3023 1086 SMART LRR_typ_2 94 118 IPR003591 -
Mtr5g3023 1086 SMART LRR_typ_2 405 429 IPR003591 -
Mtr5g3023 1086 SMART LRR_typ_2 477 501 IPR003591 -
Mtr5g3023 1086 SMART LRR_typ_2 190 214 IPR003591 -
Mtr5g3023 1086 PRINTS Leucine-rich repeat signature 121 134 - -
Mtr5g3023 1086 PRINTS Leucine-rich repeat signature 405 418 - -
Mtr5g3023 1086 Gene3D Transferase(Phosphotransferase) domain 1 768 989 - -
Mtr5g3023 1086 ProSiteProfiles Protein kinase domain profile. 691 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3023 1086 SUPERFAMILY L domain-like 50 304 - -
Mtr5g3023 1086 SMART serkin_6 691 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3023 1086 ProSitePatterns Protein kinases ATP-binding region signature. 697 719 IPR017441 GO:0005524
Mtr5g3023 1086 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 4 989 - -
Mtr5g3023 1086 Gene3D Ribonuclease Inhibitor 184 285 IPR032675 -
Mtr5g3023 1086 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Mtr5g3023 1086 Gene3D Phosphorylase Kinase; domain 1 671 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3023 Mtr-Chr5 39034105 39038146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3023 105 976 Receptor kinase-like Gene Family AT1G73080 45.989 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr5g3023 Pkinase 8.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3023 - - mtr:MTR_5g087370 1562.74