Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3007 ATGTTAACAAGTGATTCTGATGATGATAATGGTGCGGATTTCTTGATTCAAGCCAACACACGTAAGCGCTTAAAACCGCACGATGATAACGATGATGTTTTTGAACGTGCTGAGGTTGTTACTGAAGGAAGACAAACTAGTTTGGAGACAAAAAATAATGTTGATGCAAATAGAAAGAAATCTGGTCGTGGAAGAGGGAGTTCTGGTTCAAGCAGAGGCCGTGGTTCCAAATCTAATGATCAGACCAGAACACAAATTTCTTCTTCAACAGTTTCGGCTTCAAATGGTCAGAATGAGAATGATGGTAGACTCAAAGATCCGTTTCGTAATGATAATGGTGCTTCATTAGAGGAGGAGATTGCATCTTTACGTGCAAAAGTTGTTGTGTTGGAGGAAGACTTACGTAAAGCAAAGCAAGAAGCCTCTCAGCATCAGAATATTTGTCCACAGTTAGAAAAGGAACTGAAGGAATTGAAAGATCTTGAGGAGCAAATGAAACCTAAGAGAACAAAAATAATATCCGATTTGCTGATATCAGTTTCAAAGGCTGAGAGACAAGAAGCAAGACTAAAAGTACGACAGGACTCATTGAGACTCGGAAATGTTGGTGTAATCAGAGCTGGAACTGTCTTATCTGAGACCTGGGAAGATGGTCAGGCGTTAAAGGATCTGAATGCCCAGCTTAAACAACTACTCGAAACAAAGGAGGCAATTGAGCGCCAGCGCAAGTTATTCAAGAAAAAACAATCTGATAAGGGTGATGGAATAGATGCAGAGGCTGGATTGTCGGAAGATATTCTCATTCAGGAGGAAATCTATAAGTCTCGACTAGCCAGCATTAAACGGGAAGAAGAAATCGCTTTGCGAGAGTGCCACCTCTACGAACTAGAGAAGGGAAGACTAATTCGTGAAATGAAACGCATACTGGATGAAGATGCTTCACAGTTCAACAACTTTCAGATTTTAAACCATCGTTATGTCTTCCTAAACCTTCTTGGAAAGGGAGGCTATAGCGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCATGCAAGCTTCATGGTGTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATAAGGCATGCAATTCGGGAGTATAATATTCACAAGACCTTGGTTCATCGTCATATTGTTCGTTTATGGGACATCTTTAAGATTGATCCAAATACATTCTGCACTGTTCTGGAGTTTTGTAGTGGTAAAGATCTTGATGATGTTCTTAAGGAAACACCTATTTTGCCCGAGAACGAGGCTAAAGTCGTTTTATTTCAGATTATCAAAGCCCTTGTTTACATGAATGAAAGAACGCCGAAGGTTATCCATTATGATTTAAAGCCCGGAAATGTTTTGTTTGATGAGCTTGGTATTGCCAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGAATGACGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGTGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCAGAGCAAGACACCTCGCATATCATCCAAGGTTGATGTCTGGTCTGCTGGTATTTGTTTTTATTACATGCTCTTTGGCAGACGTCCTTTCGGGCATGACCAAACACAACAGAAAATATTTCTTAAGCACACAATTATTAATGCATACGAAGTAGAATTTCCCTCTGGATCTACTGTTTCTAATAAGGCTAAGGATTTTATTCGGCGGTGTCTTACATATGACCAGGCGGAGAGACCAGATGTATTAACAATTGCTCAAGACTCATATCTCACTTTTACTCAGGAATAG 1815 0.405 MLTSDSDDDNGADFLIQANTRKRLKPHDDNDDVFERAEVVTEGRQTSLETKNNVDANRKKSGRGRGSSGSSRGRGSKSNDQTRTQISSSTVSASNGQNENDGRLKDPFRNDNGASLEEEIASLRAKVVVLEEDLRKAKQEASQHQNICPQLEKELKELKDLEEQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVLSETWEDGQALKDLNAQLKQLLETKEAIERQRKLFKKKQSDKGDGIDAEAGLSEDILIQEEIYKSRLASIKREEEIALRECHLYELEKGRLIREMKRILDEDASQFNNFQILNHRYVFLNLLGKGGYSEVYKAFDLVEHRYVACKLHGVNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFKIDPNTFCTVLEFCSGKDLDDVLKETPILPENEAKVVLFQIIKALVYMNERTPKVIHYDLKPGNVLFDELGIAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFEQSKTPRISSKVDVWSAGICFYYMLFGRRPFGHDQTQQKIFLKHTIINAYEVEFPSGSTVSNKAKDFIRRCLTYDQAERPDVLTIAQDSYLTFTQE* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3007 604 Pfam Protein kinase domain 326 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3007 604 SUPERFAMILY Protein kinase-like (PK-like) 318 600 IPR011009 -
Mtr5g3007 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Mtr5g3007 604 ProSiteProfiles Protein kinase domain profile. 326 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3007 604 ProSitePatterns Protein kinases ATP-binding region signature. 332 355 IPR017441 GO:0005524
Mtr5g3007 604 Coils Coil 221 248 - -
Mtr5g3007 604 MobiDBLite consensus disorder prediction 20 39 - -
Mtr5g3007 604 MobiDBLite consensus disorder prediction 63 101 - -
Mtr5g3007 604 PANTHER MIXED LINEAGE PROTEIN KINASE 6 603 - -
Mtr5g3007 604 MobiDBLite consensus disorder prediction 1 111 - -
Mtr5g3007 604 CDD STKc_TLK 325 598 - -
Mtr5g3007 604 PANTHER BNAC09G36930D PROTEIN 6 603 - -
Mtr5g3007 604 SMART serkin_6 326 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3007 604 Coils Coil 113 171 - -
Mtr5g3007 604 Gene3D Transferase(Phosphotransferase) domain 1 317 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3007 Mtr-Chr5 38754617 38819793 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3007 313 599 MAP Kinase Kinase Kinase AT3G13530 28.179 1.21e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Mtr5g3007 Pkinase 1.5e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3007 K08864 - gmx:100789927 927.546