Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3005 ATGTCGGATGATATGCTAGTGCATTTTTCTTCGAATTCTTCGAATCAATCGGATCAGTCTCTGCCTACAAAGATTGCCAAGTTGGAAGCTCGAATGGTAGGAAAAGGTTCTTCAACTGCTTCTCAGCAACAGGGTTGGCCTTCTGTTTCTTCTGCTGGGAAATTCAGTGGAGTAGCAGCTGAAGAAATGGTTGAGCCTTGTAGTTCAAGTGATTCTGATGATGATAATGGTGCGGATTTCTTGATTCAAGCCAACACACGTAAGCGCTTAAAACCTCACGAAGATAACGATGATGTTTTTGAACGTGCTGAGGTTGTTACTGAAGGAAGACAAACTAGTTTGGAGACAAAAAATAATGTTGATGCAAATAGAAAGAAATCTGGTCGTGGAAGAGGGAGTTCTGGTTCAAGCAGAGGCCGTGGTTCCAAATTTAATGATCAGACCAGAACACAAATTTCTTCTTCGACAGTTTCGGCTTCAAATGGTCAGAATGAGAATGATGGTAGACTCAAAGATCCGTTTCGTAATGATAATGGTGCTTCATTAGAGGAGGAGATTGCATCTTTACGTGCAAAAGTTGTTGTGTTGGAGGAAGACTTGCGTAAAGCAAAGCAAGAAGCCTCTCAGCATCAGAATATTTGTCCACAGTTAGAAAAGGAACTGAAGGAATTGAAAGATCTTGAGGAGCAAATGAAACCTAAGAGAACAAAAATAATATCCGATTTGCTGATATCAGTTTCAAAGGCTGAGAGACAAGAAGCAAGACTAAAAGTACGACAGGACTCATTGAGACTCGGAAATGTTGGTGTAATCAGAGCTGGAACTGTCTTATCTGAGACCTGGGAAGATGGTCAGGCGTTAAAGGATCTGAATGCCCAGCTTAAACAACTACTCGAAACAAAGGAGGCAATTGAGCGCCAGCGCAAGTTATTCAAGAAAAAACAATCTGATAAGGGTGATGGAATAGATGCAGAGGCTGGATTGCTGGAAGATATTCTCATTCACGAGGAAATCTATAAGTCTCGACTAGCCAGCATTAAACGGGAAGAAGAAATTGTTTTGCGAGAGAGGGACCGCTACGAACTAGAGAAGGGAAGACTAATTCGTGAAATGAAACGCATTCGGGATGAAGATGGTTCACGGTTCAACAATTTTCAGATTCTAAACCATCGTTACGCCCTTCTAAACCTTCTTGGAAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTTGATTTGGTAGAGCATAGATATGTTGCATGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATAAGGCATGCAATTCGGGAGTATAATATTCACAAGACCTTGGTCCATCGTCATATTGTTCGTTTATGGGACATCTTTGAGATTGATCCAAATACATTCTGCACTGTTCTAGAGTATTGCAGCGGGAAAGATCTTGATGCTGTTCTTAAAGCAACACCTATATTGCCTGAGAAGGAGGCTAGAGTCATTTTAGTTCAGATTTTCCAAGGCCTTATTTACATGAATAAAAGAGCACTGAAGATTATCCATTATGATTTAAAGCCCGGAAATGTTTTGTTTGATGAGCTTGGTATTGCCAAAGTGACTGATTTTGGTCTCAGCAAGATTGTGGAGAATGACGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGGGCTGGAACGTATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACGCCTCTTATATCATCCAAGGTTGATGTCTGGTCTGCTGGTATTTTGTTTTATCAAATGCTATTCGGCAGACGTCCTTTCGGACATGACCAAACACAAGAGAGAATACTTCGTGAAGACACAATTATTAAGGCACGCAAGGTTGAATTTCCCTCAAGACCTACTGTTTCTAATGAGGCAAAGGAATTTATACGGCGGTGTCTGACATATAACCAGGCTGAGAGACCAGATGTATTGACCATTGCTCAAGATCCATATCTCACATACGTGAAGAAGTAG 2013 0.4153 MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSTASQQQGWPSVSSAGKFSGVAAEEMVEPCSSSDSDDDNGADFLIQANTRKRLKPHEDNDDVFERAEVVTEGRQTSLETKNNVDANRKKSGRGRGSSGSSRGRGSKFNDQTRTQISSSTVSASNGQNENDGRLKDPFRNDNGASLEEEIASLRAKVVVLEEDLRKAKQEASQHQNICPQLEKELKELKDLEEQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVLSETWEDGQALKDLNAQLKQLLETKEAIERQRKLFKKKQSDKGDGIDAEAGLLEDILIHEEIYKSRLASIKREEEIVLRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDPNTFCTVLEYCSGKDLDAVLKATPILPEKEARVILVQIFQGLIYMNKRALKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKEFIRRCLTYNQAERPDVLTIAQDPYLTYVKK* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3005 670 ProSitePatterns Protein kinases ATP-binding region signature. 398 421 IPR017441 GO:0005524
Mtr5g3005 670 Pfam Protein kinase domain 393 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3005 670 Coils Coil 343 377 - -
Mtr5g3005 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672|GO:0006468
Mtr5g3005 670 PANTHER BNAC09G36930D PROTEIN 1 670 - -
Mtr5g3005 670 SMART serkin_6 392 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3005 670 Coils Coil 179 237 - -
Mtr5g3005 670 SUPERFAMILY Protein kinase-like (PK-like) 384 666 IPR011009 -
Mtr5g3005 670 MobiDBLite consensus disorder prediction 1 23 - -
Mtr5g3005 670 ProSiteProfiles Protein kinase domain profile. 392 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3005 670 MobiDBLite consensus disorder prediction 35 51 - -
Mtr5g3005 670 CDD STKc_TLK 391 664 - -
Mtr5g3005 670 PANTHER MIXED LINEAGE PROTEIN KINASE 1 670 - -
Mtr5g3005 670 Gene3D Transferase(Phosphotransferase) domain 1 383 670 - -
Mtr5g3005 670 MobiDBLite consensus disorder prediction 129 167 - -
Mtr5g3005 670 Coils Coil 287 314 - -
Mtr5g3005 670 MobiDBLite consensus disorder prediction 1 177 - -
Mtr5g3005 670 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3005 Mtr-Chr5 38717741 38727522 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3005 375 665 MAP Kinase Kinase Kinase AT3G13530 26.531 4.08e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Mtr5g3005 Pkinase 5.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3005 K08864 - gmx:100789927 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3005 5 38717741 38727522 Mtr5g3005 5 38717741 38727522 ECH