Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3001 ATGTCGTGTTGGCCGGAATTGAATTCGAACGGTACTTCTCACAGAAAGTACGATGTGTTCATCAGCTTTAGAGGCGAGGACACTAGATTCGGTATCACAGACCATCTTTATGATGCTCTGATTCATAAATCAATAAAAACATACATAGATTACCAGCTCAATAGAGGAGAAGATGTTTGGCCAGCACTTTCCAAAGCAATTGAGGACTCATACATCTCCATCATTGTTTTCTCTGAAAATTTTGCTACATCAAAATGGTGTTTGGAAGAACTCGTCAAAGTGCTCGAATGTAGAAAAGATCATGGTCAAATTGTTATACCTGTTTTTTATAAAGCAGATCCTTCTCACATAAGAAACCAGAAAGCCAGTTATGAGACTGCATTCGCGAAACATGAGCGTGAGCTCGGGACCAAAGACAGCATATCCAACAAATCTAAAGTGCTTAAATGGAAAGCTGCCCTTACTGAAGCAGCCAATATATCTGGATGGGACAGTCACACCTATGAGAAAGAATCTATCCTCATTCTCAAAATTGTGAATGATGTATTGGAAAAGCTACAACTGAGGTACCCTAATGAACTAGAAGGCGTGGTGAGAAACGAAAAAAACAGTGAATGCGTAGAATCATTACTGAAAAAATTTCGAATACTTGGAATTTGGAGTATGGGCGGAATGGGAAAGACAACCATTGCCAAAGTCTTTTTTGCCAAACACTTTGCCCAATATGACCATGTTTGCTTTGCTAATGCAAAAGAATATTCACTTAGCAGGCTTCTCTCTGAGCTACTAAAGGAAGAAATTTCTGCATCCGATGTTGTAAAATCTACAATTCATATGAGGAGGCTGAGAAGTAGAAAAGTTTTGATTGTACTTGATAATGTGGAAAGTTCAGATCAATTTGATTATTTATGCAGAGACTACCATGACCTAACTCAGGATAGTAGACTCATTATAACAACAAAAGACAAACAATTGCTGAGAGGAAGAGTTGATTGGATATATGAGGTCAAGCACTGGGAAGATCCAAAATCTCTAGAGCTTTTTTGTCTAGAAGCTTTCGAGCCAAGTAATCCTCGCGAGAAGTATGAGCATCTCTTGCAAAAGGCAATCACTTATGCAGGGGGCGTTCCACTTGCCCTTAAACTTTTGGCTTTACATCTTCGTTCAAGAGAGATTGAATTTTGGGTAAGTTCTTTCAAGAAACTCGATAAGTATCCTGATGGCAGATTGCACAAAGTTTTAAGAGTGAGCTATGATGAATTAGATGCACTGCAGAAGAAGATATTTCTTGACATTGCATTCTTCTTCATAGGAGAAAAGAAAGAGCGTGTGACAAAGATACTAGATGCTTGTGGTTTTGAACCAAACAGTGGAATAGTTGTCCTCAAAGACAAGGCTTTGATAACTGTCTCAAATAACCATACAATACAAATGCATGACTTGCTGCAGAAAATGGGTTCGGACATAATATGTAATGATTGTGGTGAAGACCCTGCAACACATACACGACTGAGTGGAACAGCAGCTTTTGAAGTAATTGAAGAAAACAAGGGGAGTAGCTCAATTGAAGGGATAATGTTGGATTTGTCTCAAAACAATGTTTTACCTTTAACTTCCGATACATTCACCAAGATGAAAGCCTTGAGAATTCTTAAATTCCATGCACCCTCTAGCCTGCAGAAATGTACTATCACGTACCCCTACCTTCCAAAATTTCTTAAGCTATTTTCAAAAAAACTTAGGTATTTTGAGTGGTATGGATACCCTTTTGAGTCTCTTCCGCAGCCTTTTCATGCTAAGTTTCTTGTTGAGATCCGCATGCCGCACAGCAATGTTAAACAACTGTGGCAGGGGATGAAGGAACTAGGTAAATTAGAAGGAATTGACCTGAGTGAATGCAAGCACTTAATAAAGCTTCCGGATTTTTCTAAGGCGTCAAGTCTTAAATGGGTTAATCTCTCTGGTTGTGAGAGTCTAGTTGATCTTCCTCCATCTGTTTTATGTGCAGATATGCTTGTTACTTTGATACTGCATAGGTGTACAAAGATTACGAGTGTTAGAGGTGAAAAACATTTAAATTGTTTGGAGAAGATCAGTGTGGATGGGTGCAAGAGTCTGAAAATTTTTGCAGTGTCCTCGAATTTAATTGAAAACTTGGATTTAAGCAGTACAGGAATCCAAACACTGGACCTATCAATTGGGAGCCTTGAAAAACTCAAACGACTTAATCTAGATAGTTTAAAACTCAACTGTCTTCCAGAGGGGTTATCTAGTGTGACATCTATTAGTGAGTTGAAAATTTCTGGCAGTGCACTAATAGTTGAGAAACAATTGTTAGAGGAGCTCTTCGATGGATTACAATCCCTACAAATACTACATATGAAGGATTTCATAAACCAGTTTGAACTCCCCAACAACATCCACGTTCTATCAAAGTTAAAGGAATTAAACCTTGATGGGAGCAACATGAAAAGGTTGCCTGAAAGCATTAAGAAACTTGAAGAACTGGAAATTCTTTCTTTGGTGAATTGCAGGGAGCTTGAGTGCATACCAGAGCTTCCACCTCTCGTCACACTGTTAAATGCAGTGAACTGCACATCCCTGGTTTCAGTGTCAAATCTAAAAGGATTAGCAACAATGATGATGGGAAAAACCAAACACATTTCATTCAGTAACAGCTTGAATTTGGATGGACATTCACTCAGCCTTATAATGGAAAATCTCAATTTAACAATGATGAGTGCTGTGTTTCAAAATGTGTCTGTAAGAAGACTCCGTGTGAAAGTTCACAGCTACAACTATAACAGTGTTGATGCTTGTCGACCAGGAACAAGTATCCCGAGGCTGTTCAAATGTCAAACAGCTGCTGACTCCTCCATTACCATTACGTTGCTTCCTGAACGTTCCAACTTGCTTGGATTTATATACTCAGTGGTTCTTTCTCCAGCAGGTGGAAATGGAATGAAGAAGGGTGAAGCTCGAATAAAGTGTCAATGCAGCTTGGGAAAAGAAGGTATAAAGGCTTCCTGGCTAAATACTCATGTCACAGAACTAAACTCAGATCATACTTATGTGTGGTATGATCCATTCCATTGTGACAGCATTCTCAAATTTTATCAACCTAAAATTTGTTTTGAGTTCTATGTTACAAACGATACTACTGGGGAAGTTGATAGTTCAATTCATATTAAAGAGTGTGGGGTACGACAAGTAAGTGTTGCAGAATTGGAGACTGTTTTGCCGGAATTGGAATTGGATTCGCAAAAGAAAAAAGATTTGAAGAAGGCAGTGGAATTAGAATCAGGACGTAGGATAACCTTGAAGCCAATTGTACAAGAATCAATTGAAGAGAATAATGAGAATAAAAGCCACTTCTTTAATGTGGAAGAGAGAATCGAATCTTCCAACAAGGAAATCAATACCAATGCTGGAACCAGTCATGAAGAGAATGTTACAAACACTGCAAAAGTTTTAGAAAGCAAAGGAATTGAAGGAAGACCAACAGAATCTGAAGCTGGATTGCATCTTCCGGTAATGTCAGCGGTCGAAGAAAATGCATCTGATAACAAGTTAAGTGAAAACAATTATGATTGGCAAGACAATATTGATGATGAGACCAAGCAATCAAAAGGAAAAGCAAATATACAAGGAGGACAAGTTATTGTTCCTGACACCAATGGTTCAATAAGCAAAGAAAAGGCACCGGTGGATCTTAGCAAATCCGAAGATGGATCTGACGAGGACATTTTTTCTGAAGTTGAGAGGATCCTGAAGGGAAGTCCAGAGTCCTCGCCAAAAGCAACTTGTTCCACAAGCGATGATGTTGCTGTAAGAGAAGCTTTGCATAACCTTGAATGTCTATTGGAAAAATCACTTGAGTCCATTCTCTGTGATGTAGAGCTACAAAAACAGTTACGCACGTCTTTGGAATGCATAAAACAAGCAACCCATGAAAAAGTTTCTCCAAATGTTGTGAAGCTTGTCCAGAAAATGGCATCCTCTATTCATAACCTTTTCGATGACTTTGTCATGACTAAAAATGCTGTTGAGGATCACATTAATGCTTTGCAAAAAAGAGAAAAGCTTGTGCAACTAATAAGAGATGGTAAGAAACAGAAGAAATCAATGAAGAAAGAAAAGAGTCGGTTTGAGGATGAAGACAAGAGGCTCGCGGAAGAAGGTGAAAAGTTGGACGAAAAGATTAGAATTCTTGTTGAGCAAAAGAAAAGTAATGAGCTGAAAAGAACCAAGTTGAAGGAAAAGATGGAAAGATGTGAAGGTGAAAAGAACAAAGTTGAAGATGAGGCTAAGAATATGCTAGCTGAAAGCAAAGAGCTTATGTCGAGTATTAAGAATTCTAAATCTTCGTATGATACTGCTCTGTCAAGGCAGAATAAATTGGAAGACAAATGGGAAGGCTTTAGGATAGCTTTTGCAGCCAACCTGATTAACAATTCTAATTTTGTTTTTGAATAA 4476 0.3838 MSCWPELNSNGTSHRKYDVFISFRGEDTRFGITDHLYDALIHKSIKTYIDYQLNRGEDVWPALSKAIEDSYISIIVFSENFATSKWCLEELVKVLECRKDHGQIVIPVFYKADPSHIRNQKASYETAFAKHERELGTKDSISNKSKVLKWKAALTEAANISGWDSHTYEKESILILKIVNDVLEKLQLRYPNELEGVVRNEKNSECVESLLKKFRILGIWSMGGMGKTTIAKVFFAKHFAQYDHVCFANAKEYSLSRLLSELLKEEISASDVVKSTIHMRRLRSRKVLIVLDNVESSDQFDYLCRDYHDLTQDSRLIITTKDKQLLRGRVDWIYEVKHWEDPKSLELFCLEAFEPSNPREKYEHLLQKAITYAGGVPLALKLLALHLRSREIEFWVSSFKKLDKYPDGRLHKVLRVSYDELDALQKKIFLDIAFFFIGEKKERVTKILDACGFEPNSGIVVLKDKALITVSNNHTIQMHDLLQKMGSDIICNDCGEDPATHTRLSGTAAFEVIEENKGSSSIEGIMLDLSQNNVLPLTSDTFTKMKALRILKFHAPSSLQKCTITYPYLPKFLKLFSKKLRYFEWYGYPFESLPQPFHAKFLVEIRMPHSNVKQLWQGMKELGKLEGIDLSECKHLIKLPDFSKASSLKWVNLSGCESLVDLPPSVLCADMLVTLILHRCTKITSVRGEKHLNCLEKISVDGCKSLKIFAVSSNLIENLDLSSTGIQTLDLSIGSLEKLKRLNLDSLKLNCLPEGLSSVTSISELKISGSALIVEKQLLEELFDGLQSLQILHMKDFINQFELPNNIHVLSKLKELNLDGSNMKRLPESIKKLEELEILSLVNCRELECIPELPPLVTLLNAVNCTSLVSVSNLKGLATMMMGKTKHISFSNSLNLDGHSLSLIMENLNLTMMSAVFQNVSVRRLRVKVHSYNYNSVDACRPGTSIPRLFKCQTAADSSITITLLPERSNLLGFIYSVVLSPAGGNGMKKGEARIKCQCSLGKEGIKASWLNTHVTELNSDHTYVWYDPFHCDSILKFYQPKICFEFYVTNDTTGEVDSSIHIKECGVRQVSVAELETVLPELELDSQKKKDLKKAVELESGRRITLKPIVQESIEENNENKSHFFNVEERIESSNKEINTNAGTSHEENVTNTAKVLESKGIEGRPTESEAGLHLPVMSAVEENASDNKLSENNYDWQDNIDDETKQSKGKANIQGGQVIVPDTNGSISKEKAPVDLSKSEDGSDEDIFSEVERILKGSPESSPKATCSTSDDVAVREALHNLECLLEKSLESILCDVELQKQLRTSLECIKQATHEKVSPNVVKLVQKMASSIHNLFDDFVMTKNAVEDHINALQKREKLVQLIRDGKKQKKSMKKEKSRFEDEDKRLAEEGEKLDEKIRILVEQKKSNELKRTKLKEKMERCEGEKNKVEDEAKNMLAESKELMSSIKNSKSSYDTALSRQNKLEDKWEGFRIAFAANLINNSNFVFE* 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3001 1491 ProSiteProfiles TIR domain profile. 15 186 IPR000157 GO:0007165
Mtr5g3001 1491 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 163 IPR035897 -
Mtr5g3001 1491 Gene3D - 184 331 IPR027417 -
Mtr5g3001 1491 Gene3D - 13 183 IPR035897 -
Mtr5g3001 1491 Pfam Leucine Rich Repeat 601 618 IPR011713 -
Mtr5g3001 1491 Pfam TIR domain 16 192 IPR000157 GO:0007165
Mtr5g3001 1491 Gene3D - 340 422 IPR042197 -
Mtr5g3001 1491 MobiDBLite consensus disorder prediction 1218 1245 - -
Mtr5g3001 1491 Gene3D Ribonuclease Inhibitor 714 913 IPR032675 -
Mtr5g3001 1491 Gene3D Ribonuclease Inhibitor 523 713 IPR032675 -
Mtr5g3001 1491 MobiDBLite consensus disorder prediction 1368 1388 - -
Mtr5g3001 1491 SMART till_3 16 160 IPR000157 GO:0007165
Mtr5g3001 1491 SUPERFAMILY "Winged helix" DNA-binding domain 410 492 IPR036390 -
Mtr5g3001 1491 Pfam NB-ARC domain 214 421 IPR002182 GO:0043531
Mtr5g3001 1491 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 956 IPR044974 GO:0006952
Mtr5g3001 1491 PANTHER NB-ARC DOMAIN PROTEIN 15 956 - -
Mtr5g3001 1491 SUPERFAMILY L domain-like 526 873 - -
Mtr5g3001 1491 Coils Coil 1408 1449 - -
Mtr5g3001 1491 Coils Coil 1366 1393 - -
Mtr5g3001 1491 PRINTS Disease resistance protein signature 216 231 - -
Mtr5g3001 1491 PRINTS Disease resistance protein signature 281 295 - -
Mtr5g3001 1491 PRINTS Disease resistance protein signature 373 387 - -
Mtr5g3001 1491 PRINTS Disease resistance protein signature 620 636 - -
Mtr5g3001 1491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 432 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3001 Mtr-Chr5 38648812 38654091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3001 215 1086 WRKY Transcription Factor Family AT5G45050 29.299 3.27e-75 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3001 - - mtr:MTR_8g018040 1667.9