Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2980 ATGCTTAAAATATTGTCTTATCTTCTTTCTTACACTAATTTATTCATTAACACTAACACAAAAACTTCAATTTTCTCTTCTTCTCTTCAAAAACCATTTGTTATATTCAACTCAATGAAAATCAGTTTCAGTTTCATAGTTCTTATCTTGTTAATAGCTTCAACAGAATCAAAGTGTAACGAAGGTTGTAGTCTAGCTCTAGCGTCATACACCTTAAACCATGTTTCCAACCTTACATATATTTCAAACATTATGAAATCCAATGTTCTTTCAAAACCTCAAGATATCATCATCAACAACGACAAAAACAAAAGGGCGAATGTTCCCTTCCCTTGTAATTGCATCAATGGAGAGTTTCTTGCTTATACATTTCTCTATGAGCTTCAGCCAGGAGAAACATATACATCAGTTGCAGAAGAGAGTTTTTCAAATTTGACTACTGATGTTTGGATGCAAAACTTCAATGTTTATAGACCAACTAATATTCCTGATTTTGCAATGATTAAAGTTACTGTTAATTGTTCTTGTGGGAATAAAGAGGTTTCTATGGATTATGGATTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGAGTCTATTGCTAAGGGTGCAGAGATTGAGGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTTAATTTCAGCAAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGATCAAAATGGAAGCTATTTGCCCCTTCACCCGAGCACAGTAGGTCTAGGAACTGTGGCTATTACTGGAATATCTGTTGGAGTACTAGCAGCGCTTTTACTATTGTTATTTTTTGTGTATATTAAATATTATCTAAAGAAGAAGAATAAGAAGACATGGGAGAAAAATTTGATTTTGGATGATTCCAAGATGAAGTCAGCTCAAATTGGTACCAACATCGCAAGCATTATGGTGGAAAAATCAGAAGAATTTTCATACAAAGAACTATCGATTGCCACAAATAATTTCAGCATGGCTAATAAAATTGGTGAAGGTGGTTTTGGAGAAGTCTTCTATGCAGAGCTGAGAGGACAGAAAGCCGCCATTAAGAAGATGAAGATGAAGGCATCAAAAGAATTTTGCGCTGAATTGAAAGTCTTAACTCTTGTTCATCATTTGAACTTGGTAGGTTTGATTGGATATTGTGTTGAAGGTTTTCTCTTCCTTGTCTATGAATACATTGACAATGGAAACTTGAGTCAAAATCTTCACGATTCAGAAAGAGAACCTTTGTCATGGTCTACAAGGATGCAAATTGCGCTGGATTCAGCCAGAGGTCTTGAATATATTCATGAACATACAGTACCTGTATATATCCATCGCGATATAAAGTCGGAGAACATTTTATTAGACAAAAGCTTTTGTGCAAAGGTTGCAGATTTTGGATTATCCAAGCTTGCTGATGTTGGAAATTCAACTTCATCAACTATAGTTGCAGAGGGTACATTCGGTTACATGCCACCGGAATACGCATGTGGCAGTGTCTCTTCTTCTCCGAAAGTAGATGTCTACGCCTTTGGTGTTGTTCTGTATGAACTTATTTCTGCTAAAGCAGCTGTAATCAATGATGGTCCTCAAGTAACAGGGCTTGTGGCTGTGTTTGATGAAGTGTTTGGCTATGACCAAGATCCAACAGAAGGTATAAAAAATCTGGTGGATCCTAGACTTGGAGATAACTACTCAATTGATTCAGTTTGCAAGATGGCACAACTAGCAAAAGCATGTACAATGAGGGATCCACAACTACGTCCAAGTATGAGATCGATTGTGGTTGCTCTTATGACACTAACTTCTACAACTGAAGATTGGAATATTTCATCTTTTTATGAAAATCCAGCTTTTTTAAATTTAATGTCTGGAAAATAG 1887 0.363 MLKILSYLLSYTNLFINTNTKTSIFSSSLQKPFVIFNSMKISFSFIVLILLIASTESKCNEGCSLALASYTLNHVSNLTYISNIMKSNVLSKPQDIIINNDKNKRANVPFPCNCINGEFLAYTFLYELQPGETYTSVAEESFSNLTTDVWMQNFNVYRPTNIPDFAMIKVTVNCSCGNKEVSMDYGLFITYPLRSEDTLESIAKGAEIEAELLQRYNPGVNFSKGSGLVFIPGKDQNGSYLPLHPSTVGLGTVAITGISVGVLAALLLLLFFVYIKYYLKKKNKKTWEKNLILDDSKMKSAQIGTNIASIMVEKSEEFSYKELSIATNNFSMANKIGEGGFGEVFYAELRGQKAAIKKMKMKASKEFCAELKVLTLVHHLNLVGLIGYCVEGFLFLVYEYIDNGNLSQNLHDSEREPLSWSTRMQIALDSARGLEYIHEHTVPVYIHRDIKSENILLDKSFCAKVADFGLSKLADVGNSTSSTIVAEGTFGYMPPEYACGSVSSSPKVDVYAFGVVLYELISAKAAVINDGPQVTGLVAVFDEVFGYDQDPTEGIKNLVDPRLGDNYSIDSVCKMAQLAKACTMRDPQLRPSMRSIVVALMTLTSTTEDWNISSFYENPAFLNLMSGK* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2980 628 Gene3D Phosphorylase Kinase; domain 1 302 400 - -
Mtr5g2980 628 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Mtr5g2980 628 Pfam Protein tyrosine and serine/threonine kinase 332 599 IPR001245 GO:0004672|GO:0006468
Mtr5g2980 628 SMART serkin_6 330 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2980 628 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 39 628 IPR044812 GO:0019199|GO:0045087
Mtr5g2980 628 SUPERFAMILY Protein kinase-like (PK-like) 309 600 IPR011009 -
Mtr5g2980 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Mtr5g2980 628 ProSiteProfiles Protein kinase domain profile. 330 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2980 628 PANTHER LYSM RECEPTOR KINASE 1B 39 628 - -
Mtr5g2980 628 Gene3D Transferase(Phosphotransferase) domain 1 401 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2980 Mtr-Chr5 38399421 38403618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2980 39 628 Receptor kinase-like Gene Family AT3G21630 53.612 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Mtr5g2980 PK_Tyr_Ser-Thr 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2980 - K13429 mtr:MTR_5g086040 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2980 5 38399421 38403618 Mtr5g2980 5 38399421 38403618 ECH