Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2979 ATGATTCATCACACACCCAAATTCTTATCCTATGTTCCTATTATACTGTACACAATGAAACCAATCAAATTCAGATTATCATTTTTATTCATGTTACTAGCCTCTAAATCCTTCATAGCAGAATCAAAATGTAGCAAAACTTGTAATATAGCGTTAGCTTCCTATTATCTACAAGATGATACAAATCTCACATATGTTTCAAACATCATGCAATCAAACCTTGTTACAAAACCAGAAGATATTGTTAGTTACAACACAGACACAATAACAAACAAAGATTTTGTCCAATCTTTTACAAGAGTGAATGTTCCATTCCCTTGTGATTGCATCCATGATGAGTTTCTTGGCCATATATTTCAATACCAAGTTGCTACAAAAGATACTTATTTATCTGTTGCTAGTAACAATTATTCCAATTTGACTACTTCTGAATGGTTGCAAAATTTCAATAGCTATCCATCAAATGATATTCCTGATACTGGAACTCTTAATGTTACTGTTAATTGTTCATGTGGGAACAGTGATGTTTCCAAGGATTATGGTTTGTTTATTACATATCCTCTTAGACCTGAGGATTCTTTGGAATTGATTTCTAATAAGACTGAAATTGATGCTGAGTTGCTGCAAAAGTATAACCCTGGTGTGAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGGAAAGACCAAAATCGTAACTATGTGCCTTTTCACACTAGCACTGGAGGTCTATCAGGTGGAGTTATAACTGGAATATCTGTTGGAGCAGTAGCAGGACTAATTCTATTATCATTTTGCATTTATGTTACGTATTACCGAAAGAAGAAGATAAGGAAGCAAGAATTTCTTTCGGAAGAATCCAGCGCGATCTTCGGTCAAGTTAAGAATGATGAAGTCTCCGGTAATGCTACATATGGAACTTCAGATTCTGCGAGTCCTGCTAATATGATTGGAATTAGGGTGGAAAAATCAGGAGAGTTTTCATATGAAGAACTAGCCAATGCCACAAATAACTTCAACATGGCTAACAAAATCGGTCAAGGTGGTTTCGGTGAAGTCTATTACGCAGAGCTGAATGGCGAGAAAGCTGCAATAAAAAAGATGGACATGAAAGCAACAAAAGAATTTCTTGCTGAGTTGAAGGTGTTGACGCGTGTTCATCACGTGAACCTGGTACGCTTGATCGGATACTGTGTTGAGGGATCCCTTTTCCTTGTCTATGAATACATTGATAATGGAAACTTAGGCCAACATCTACGCAGTTCAGATGGAGAACCTTTGTCATGGTCTATCAGGGTTAAAATTGCTCTGGATTCAGCCAGAGGTCTTGAATACATTCACGAACATACCGTCCCTACATATATTCATCGCGACATAAAGTCAGAAAATATTCTATTAGACAAAAACTTCTGTGCAAAGGTTGCAGACTTCGGATTAACCAAGCTGATTGATGCTGGAATTTCATCAGTTCCCACTGTTAATATGGCTGGCACATTTGGCTACATGCCACCAGAATATGCATATGGTAGTGTTTCTTCAAAAATAGATGTATATGCTTTTGGAGTAGTTCTTTATGAACTAATTTCTGCTAAAGCAGCTGTAATAATGGGTGAAGATTCTGGTGCTGATTTAAAGGGCCTTGTAGTTTTGTTTGAAGAAGTTTTTGATCAGCCACATCCTATAGAAGGTCTTAAAAAACTGGTGGATCCTAGGCTTGGAGATAACTATCCAATTGATCATGTATTCAAGATGGCACAACTTGCGAAAGTATGTACAAATAGTGATCCGCAGCAACGTCCAAATATGAGTTCTGTTGTAGTTGCTCTTACCACACTAACTTCAACTACTGAGGATTGGGATATTACTTCTATATTCAAAAATCCAAATCTTGTAAATCTAATGTCTGGAAGATAG 1917 0.3672 MIHHTPKFLSYVPIILYTMKPIKFRLSFLFMLLASKSFIAESKCSKTCNIALASYYLQDDTNLTYVSNIMQSNLVTKPEDIVSYNTDTITNKDFVQSFTRVNVPFPCDCIHDEFLGHIFQYQVATKDTYLSVASNNYSNLTTSEWLQNFNSYPSNDIPDTGTLNVTVNCSCGNSDVSKDYGLFITYPLRPEDSLELISNKTEIDAELLQKYNPGVNFSQGSGLVYIPGKDQNRNYVPFHTSTGGLSGGVITGISVGAVAGLILLSFCIYVTYYRKKKIRKQEFLSEESSAIFGQVKNDEVSGNATYGTSDSASPANMIGIRVEKSGEFSYEELANATNNFNMANKIGQGGFGEVYYAELNGEKAAIKKMDMKATKEFLAELKVLTRVHHVNLVRLIGYCVEGSLFLVYEYIDNGNLGQHLRSSDGEPLSWSIRVKIALDSARGLEYIHEHTVPTYIHRDIKSENILLDKNFCAKVADFGLTKLIDAGISSVPTVNMAGTFGYMPPEYAYGSVSSKIDVYAFGVVLYELISAKAAVIMGEDSGADLKGLVVLFEEVFDQPHPIEGLKKLVDPRLGDNYPIDHVFKMAQLAKVCTNSDPQQRPNMSSVVVALTTLTSTTEDWDITSIFKNPNLVNLMSGR* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2979 638 ProSiteProfiles Protein kinase domain profile. 340 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2979 638 SMART serkin_6 340 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2979 638 CDD STKc_IRAK 346 607 - -
Mtr5g2979 638 PANTHER LYSM RECEPTOR KINASE 1B 23 638 - -
Mtr5g2979 638 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Mtr5g2979 638 Gene3D Phosphorylase Kinase; domain 1 312 410 - -
Mtr5g2979 638 Pfam Protein tyrosine and serine/threonine kinase 341 609 IPR001245 GO:0004672|GO:0006468
Mtr5g2979 638 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 23 638 IPR044812 GO:0019199|GO:0045087
Mtr5g2979 638 Gene3D Transferase(Phosphotransferase) domain 1 411 628 - -
Mtr5g2979 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Mtr5g2979 638 SUPERFAMILY Protein kinase-like (PK-like) 321 610 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2979 Mtr-Chr5 38394425 38398594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2979 22 638 Receptor kinase-like Gene Family AT3G21630 56.051 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Mtr5g2979 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2979 - K13429 mtr:MTR_5g086030 1271.53