Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2965 ATGTTAGGGTTTGGAGGAAACAGTTGCAGTGAGATTTCTTCTATGGATCATCAAAATCAAATGATGAACATGGAAACTAATAGGAAGTTTTTTTCATTTCCTCTGAGTAACAATTCCTCTGGTGTTCAAAATCATCATAACTATACCCAACACCAGAACAACACCAACAACAACACTTGTAGGGATAAAATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCTTCTTACCTCAATTGCTTGAAGGTTGGAGCACCTCCTGAAGTGGTGGCAAGCTTAGAGGAGTCATGTGCAAAATGTGAAATATTGAATGGTTCTTCAGGAAGGACAGGAAGTAGTAGTTCTTGTATAGGTGAAGATCCAGGTTTGGATCAGTTCATGGAGGCATATTGTGAGATGCTTATCAAGTATGAGCAAGAACTCACTAAACCCTTCAAAGAAGCCATGCTTTTCCTTTCAAGAATTGAGTCTCAGCTCAAGGCTGTTGCTGTTTCAACTGACTTTGGTCAAAGTGAATTTGCAGCTTCACAGAATGAGATCGATGTGCATGAAAACAACCTAGATACAACTCAAGGTGAAGATCAGGAATTAAAAGTGCAGCTTTTACGCAAGTATAGTGGATATCTAGGAAGCCTTAAGAAAGAGTTTTTGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTCGACAACAACTACTTGATTGGTGGAGCAGGCATTACAAATGGCCTTACCCATCGGAATCCCAAAAGCAAGCCCTTGCAGAATCAACAGGCCTAGATTTGAAGCAGATCAACAATTGGTTCATTAATCAGAGAAAACGTCACTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCCACAAATTACTACATGGAAAATGTCATGTGCAAGCCATTCCCTATGGATGCCATGCCTATGCTTCTTTAG 939 0.4036 MLGFGGNSCSEISSMDHQNQMMNMETNRKFFSFPLSNNSSGVQNHHNYTQHQNNTNNNTCRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEILNGSSGRTGSSSSCIGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKAVAVSTDFGQSEFAASQNEIDVHENNLDTTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2965 312 Pfam KNOX2 domain 116 161 IPR005541 GO:0003677|GO:0005634
Mtr5g2965 312 ProSiteProfiles ELK domain profile. 196 216 IPR005539 GO:0003677
Mtr5g2965 312 ProSiteProfiles 'Homeobox' domain profile. 216 279 IPR001356 GO:0003677
Mtr5g2965 312 Pfam KNOX1 domain 61 101 IPR005540 GO:0003677|GO:0005634
Mtr5g2965 312 Pfam ELK domain 196 217 IPR005539 GO:0003677
Mtr5g2965 312 Gene3D - 214 287 - -
Mtr5g2965 312 Pfam Homeobox KN domain 236 275 IPR008422 GO:0003677|GO:0006355
Mtr5g2965 312 ProSitePatterns 'Homeobox' domain signature. 254 277 IPR017970 GO:0000981|GO:0006355
Mtr5g2965 312 SUPERFAMILY Homeodomain-like 218 290 IPR009057 -
Mtr5g2965 312 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 303 - -
Mtr5g2965 312 SMART HOX_1 218 283 IPR001356 GO:0003677
Mtr5g2965 312 CDD homeodomain 228 280 IPR001356 GO:0003677
Mtr5g2965 312 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Mtr5g2965 312 SMART KNOX2_2 113 164 IPR005541 GO:0003677|GO:0005634
Mtr5g2965 312 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 1 303 - -
Mtr5g2965 312 SMART ELK_2 196 217 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2965 Mtr-Chr5 38295495 38299953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2965 60 308 Homeobox Transcription Factor Family AT1G62360 65.649 1.04e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mtr5g2965 KNOX2 3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2965 - - cam:101495840 489.96