Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2961 ATGGCATGGCAAACCTTAACAACACTTATAATCATCACAATCATAACAACTTTCCCAAAAACAAAATCCCAACAAGAATACGTAAACAACAAACAACTAGATTGTGAAAACACATACAACTCAACTTTAGGCAACATATGCAATAGCATCCCTTCATGTCAATCCTATCTCACCTTCAAATCCACTCCACAATTTAACACCCCCTCTTCCATTTCACACCTCCTCAACTCCTCCGCATCTCTCATCTCACAATCCAACAACATCTCCACCGTCCAAACCCTCCCTACAGACACAATCATAACCGTCCCTATAAACTGCACATGCTCCAACAACAACACCTACTACCAACACAACACTTCCTACACTATACAAAACACCGGTGAAACTTACTTCACCGTTGCTAATAACACATATCAAGCTTTATCCACGTGTCAAGCTCTTATAGCTCAGAATCCTTATAATGAACGAAAAATTGTACGTGGTAACAACTTAACTGTTCCTCTTCGTTGTGCTTGTCCTACGAAAAAACAGAGTGATGAAGGTTTCAAGTATCTTCTTACGTACTTGGTTTCTGAAGGTGAATCAGTTTCTTCTATTGCTGAAATTTTCAACGTTGATCCACAAAGCATTAATGAAGCTAATGAACTTTCTTCTACATCGTTTATTTTCTACTTTACACCACTTTTAATACCACTCAAAAATGAACCGCCGCAAAAAATAGTCAAACCGGCTTCACCACCGGAGTCTCCGCCTCCGCCGCCACCGGCGGCGGAAAACGGAAGTTCATCCTCTTCCACGAAATGGGTCATCGTTGGTGTAGTGGTTGGTGTTGTTGTTTTGCTTTTGGTGGGTGTTGCTCTGTTTTTCCTCTGTTTCCGGCGACGGCGACAACAGAAGCTACAACCACCGGCGGTGGGTAAAGCTTTCTCAGATTCTAACACAAAGAAAGTTTCAGAGGTTACTTCAACATCTCAATCTTGGTCTCTTTCTTCTGAGGGAATTCGTTATGCGGTTGATTCATTGACTGTGTACAAATATGAGGATTTGCAAAATGCAACAAATTTTTTCAGTGAAGAGAATAAGATTAAAGGTTCTGTTTATAGAGCTTCTTTTAAAGGTGATGATGCTGCTGTTAAGATTCTTAAAGGTGATGTTTCTTCTGAGATTAACATTTTGAAGAGGATTAATCATGCTAATATTATAAGGTTGTCTGGTTTTTGTGTCTACAAAGGTAACACTTATCTTGTTTATGAGTTTGCTGAAAATAATTCTCTTGATGATTGGCTTCACTCTGAGAAGAACAAGGATAAGAATTATTCGAATTCCATGTGTTTGAGTTGGTTTCAGAGAGTTCAGATTGCTCATGATGTAGCTGATGCACTTAATTACCTTCATAATTATGCTAATCCACCTCATGTTCATAAGAATTTGAAAAGTGGTAATATTCTTTTAGATGGAAAATTTAGAGGTAAAGTTTCAAATTTTGGGTTGGCAAGAGTTATGGAGAATGAAGGAGGGGATGAAGGGTTTCAATTAACAAGACATGTAATAGGGACACAAGGTTACATGGCACCGGAGTATATCGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTGCATTTGGTGTTGTGATTTTGGAGCTTCTTTCTGGTAGAGAAGTTGTTGGTAGTGACAAGAGTAATGGTTTAGGGGATCAGCTTCTTGCTTCAACTGTGAATCAAGTTCTTGAAGGAGACAATGTTAGGGAGAAGCTTAGAGGTTTCATGGATCCAAATTTGAGAGATGAATATCCTTTGGATCTTGCATTTTCAATGGCTGAGATTGCTAAAAGATGTGTTGCTCGTGATCTTAATTCAAGACCAAATGTTTCTGAGGTTTTCATGATTCTGTCTAAGATTCAATCCTCTACATTGGAGTGGGATCCATCTGGTGACCTTGAACGGTCCAGATCTGTTAGCCAAGTTTCTGATAGTAGATAG 1983 0.3893 MAWQTLTTLIIITIITTFPKTKSQQEYVNNKQLDCENTYNSTLGNICNSIPSCQSYLTFKSTPQFNTPSSISHLLNSSASLISQSNNISTVQTLPTDTIITVPINCTCSNNNTYYQHNTSYTIQNTGETYFTVANNTYQALSTCQALIAQNPYNERKIVRGNNLTVPLRCACPTKKQSDEGFKYLLTYLVSEGESVSSIAEIFNVDPQSINEANELSSTSFIFYFTPLLIPLKNEPPQKIVKPASPPESPPPPPPAAENGSSSSSTKWVIVGVVVGVVVLLLVGVALFFLCFRRRRQQKLQPPAVGKAFSDSNTKKVSEVTSTSQSWSLSSEGIRYAVDSLTVYKYEDLQNATNFFSEENKIKGSVYRASFKGDDAAVKILKGDVSSEINILKRINHANIIRLSGFCVYKGNTYLVYEFAENNSLDDWLHSEKNKDKNYSNSMCLSWFQRVQIAHDVADALNYLHNYANPPHVHKNLKSGNILLDGKFRGKVSNFGLARVMENEGGDEGFQLTRHVIGTQGYMAPEYIENGLITPKMDVFAFGVVILELLSGREVVGSDKSNGLGDQLLASTVNQVLEGDNVREKLRGFMDPNLRDEYPLDLAFSMAEIAKRCVARDLNSRPNVSEVFMILSKIQSSTLEWDPSGDLERSRSVSQVSDSR* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2961 660 SMART LysM_2 187 231 IPR018392 -
Mtr5g2961 660 MobiDBLite consensus disorder prediction 240 258 - -
Mtr5g2961 660 Pfam Protein kinase domain 383 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2961 660 Gene3D Transferase(Phosphotransferase) domain 1 420 646 - -
Mtr5g2961 660 MobiDBLite consensus disorder prediction 239 261 - -
Mtr5g2961 660 SUPERFAMILY LysM domain 186 231 IPR036779 -
Mtr5g2961 660 Gene3D LysM domain 173 240 IPR036779 -
Mtr5g2961 660 CDD LysM 187 223 IPR018392 -
Mtr5g2961 660 Pfam LysM domain 188 231 IPR018392 -
Mtr5g2961 660 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 13 651 - -
Mtr5g2961 660 SUPERFAMILY Protein kinase-like (PK-like) 328 628 IPR011009 -
Mtr5g2961 660 PANTHER PROTEIN LYK5 13 651 - -
Mtr5g2961 660 MobiDBLite consensus disorder prediction 640 660 - -
Mtr5g2961 660 ProSiteProfiles LysM domain profile. 186 230 IPR018392 -
Mtr5g2961 660 Gene3D Phosphorylase Kinase; domain 1 315 419 - -
Mtr5g2961 660 ProSiteProfiles Protein kinase domain profile. 294 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2961 Mtr-Chr5 38259632 38261970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2961 1 653 Receptor kinase-like Gene Family AT2G33580 53.148 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Mtr5g2961 Pkinase 8.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2961 - - gmx:100818534 854.744