Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2943 ATGCTCGTTAAGGGTTGCCATCTTGCTGGGAATACTTCATCAGTTGTCTCAAACATTTCGCGAAAGAGATGTTTTGAAGAATTAAGTAATCAACTAGGATTCTCCACGGACTGGCGGTATCATCCTGAAATGAATGAGATATTTGCACCTATGCTGGAAATTTCGTTACTTACCAATGCTGCTTCAAAGGAGGAATATATGAACCTGGAGACGTTGCATGAGCGTGTGCAAGCTCTATTGGGTGTTCCAAAGTCAACTTTTACATTCTCTCAATCTGCCTCGGTGAATACTTCAGAATTTTCCACTCATGATGGCAACACTGAAGAATTTGACGATAATTTTCCTGACGTCTGGTCTTGTATAGACTTCGGTGAACATCAACCACAGAAGTTAGATATCAACCACAAAAGACGGAAAATAATGGAGTATGGTGTTGATGTCTCTTTAGTTAACGATGCAAGTCACGATCAACCAATTCACGAGATGATTCCCTCGAAAGGCTTACAGGCTAGCCAAATATCAGTGGGAATCGACAGTATGCCTACTCTCGAGAAGGATGTTATTATTATTGATGCTGATGATGATGAAGAGGACATACAAGGCAGAACTGCATTCAACCAGAAGGGGGTAAATACTAACAGAGAACTTATTATTATTGATGATGATGGTGAAGAGGAGAAAGATCTTGGAAGACATGACATTGTAGACAACATTTCCATGGAAATGGACATTGGAGCAAATTCCAATATGCATGCTCCTATTGATGTAGAGGACAAACAAGAAGGAATTGGATTCAACCAGGAGGGGACAGATGCTCAAAAGGAAGTCAGTGAGCCAAAAGCTGAACAAGAGAAGCAAACAAAATCCACTAAGAGAATAAATGATGCTGTTTCCTTGATTGATTCATTCAGATGGAAGCAAATAACAGAACATGTTAGTAGTCTGAGAAAGGAATCTGTTCAGATTACTTCTAAGGCTGAAGCACGAATTGATGCAAACACTTGCCAATTATGTGAAAAGGAAAGACTTTACTTTGCACCAGTCCCACTTTTTTGTTTACATTGTGGAAACCGCATCAAGAGAACATATTTCTGTACAAAAGAAGATGATTTTGATGCACATGGTTGCATTTGTTCTACGTGTTACAAAACTTCTAAAGGTGGGAAAATTGCATTCAATGGGACATCTATTTCCAAGAAAAATCTTGAAAAAAGGAATAATGATGAAGTACTTGAAGAACCGTGGGTTGAATGCACTAAATGTGAAAGGTGGCAGCATCAAATATGTGCACTCTACAACAAGAAAGCAGATTTGGACTGCAGGGCTGAGTACATATGTCTTTTATGCCGCCTAAAAGAAATTGAAAATGGACGGCATGTTCCCTCAAAGGCTGCTAATTATTGTGCTAAGGACTTGACAAGAACTGTGCTAAGTGACCACTTAGAGAAAAGACTTTTCGAGCGTCTCCTGCAAGAGAGAGAGAACTGGGAAAAAGTTGAAGGGAATGAGAAACTTGATGAGGTTTTAGCAGCAGAAAATCTTTCAATTAGAGAAGTTCTATCTGTCGACAAGCAATTGAAAGTGAATAAGCAGTTTCTGGACATCATCCCAGAGGAGAATTACCCTACTGAATTCTCTTATAGATCAAGAGTTATACTTCTGTTTCAGAAAATTGAAGGAGCAGATGTATGCATTTTTGGAATGTATGTCCAGGAATTTGGCTCTGAATGCAGCAATCCCAATCAGCATTGTGTATACATTTCATATCTTGATTCCGTCAAGTATTTTAGGCCTGAAAGAAGGACAAAGAGTGGGGAAGCCCTTCGTACCGTCGTTTACCATGAGATCCTGATTGGATACCTTGATTTTTGCAAGAAAAATGGTTTCTCAACTTGCTACATATGGTCCTGTGCTCCTTCAGAAAAAGGGGATGATTATATACTATATTGCCATCCCGAAGAGCAAAAAACTCCAAAGAATGATAAGCTACGCCGTTGGTATCTTTCAATGCTAAAAAAGGCTAGCGAAGAGAATATTGTCGTTGGTTTAACTAACGTATATGATCGTTTCTTTCTTCCTACTGAAAAATGGAAGTCCAAGGTGACAGCTTCTCGTTTGCCATACTTTGACGGAGACTGCTGGTGCGGTAATGCTATGGTAGTAGCCAACACCCTCGAAAAAGAGAGTAGAGTAAACTATGAAAAGTTGTTGAAACAAGTGTCAAATAGAACAATAAAGGACATGGGACATGCCAAGCCTTCCAAAGACATTCTGGTGATGCAAAAAGTTGGCCAAAATATATTGCCTACAAAAGAAAACTTCCTCGTAGCTCACTTGCGATCTTCATGCATACACTGCCATGAAGTGATAGTGTCTGGGAAGCGATGGTTTTGCACTGAATGCAAGAAGTTTCAGGAGTGTGAAAGATGCCATAGTTCTGAGGAACACACTTCAAAGAACGGCGAGGTGCATACACTTTGTCAGGCTTCTGTTGATGATATCCCCTCCGACACTAAACGTAATGATATCGTCCTTGAGAGTGAATTGTTTGAAAATAGGGATAACTTTTTGATCTTCTGCCAGAAGTCTCAGTTTCAGTTTGACACACTCCGTCGTGCCAAGTATTCCTCCATGATGATCCTCTACCATCTACACAATCCTACTGTGATGATGACTCAAAACGAACACCAGTTGAGTCAAAATTGTTCAACACCAGTATGTCAATCTGGGAATCAGGAGTCAAATGAGGAAATGAAGGTGAAACTGTTGAACATTTTGAAGCATGCATCTCAATGCCGGGCAACTAAGTCTGAACCATGCTCTCATCCAAACTGTTCTCAGATCAAGAAGCTATTCTCTCATGCCAGTAAGTGTGAAATTCGAGTGAATGGGGGCTGCCAGCATTGTAAGAAGATATGGTTTATACTAACTGCTCACTCCAGAAATTGCAAAGACTCGGAATGTAGAATACCACGTTGCAGTGATTTGAAGAAGCATGTAGAACAGAAATCAATGCATTCTGAATCTTGA 3030 0.4 MLVKGCHLAGNTSSVVSNISRKRCFEELSNQLGFSTDWRYHPEMNEIFAPMLEISLLTNAASKEEYMNLETLHERVQALLGVPKSTFTFSQSASVNTSEFSTHDGNTEEFDDNFPDVWSCIDFGEHQPQKLDINHKRRKIMEYGVDVSLVNDASHDQPIHEMIPSKGLQASQISVGIDSMPTLEKDVIIIDADDDEEDIQGRTAFNQKGVNTNRELIIIDDDGEEEKDLGRHDIVDNISMEMDIGANSNMHAPIDVEDKQEGIGFNQEGTDAQKEVSEPKAEQEKQTKSTKRINDAVSLIDSFRWKQITEHVSSLRKESVQITSKAEARIDANTCQLCEKERLYFAPVPLFCLHCGNRIKRTYFCTKEDDFDAHGCICSTCYKTSKGGKIAFNGTSISKKNLEKRNNDEVLEEPWVECTKCERWQHQICALYNKKADLDCRAEYICLLCRLKEIENGRHVPSKAANYCAKDLTRTVLSDHLEKRLFERLLQERENWEKVEGNEKLDEVLAAENLSIREVLSVDKQLKVNKQFLDIIPEENYPTEFSYRSRVILLFQKIEGADVCIFGMYVQEFGSECSNPNQHCVYISYLDSVKYFRPERRTKSGEALRTVVYHEILIGYLDFCKKNGFSTCYIWSCAPSEKGDDYILYCHPEEQKTPKNDKLRRWYLSMLKKASEENIVVGLTNVYDRFFLPTEKWKSKVTASRLPYFDGDCWCGNAMVVANTLEKESRVNYEKLLKQVSNRTIKDMGHAKPSKDILVMQKVGQNILPTKENFLVAHLRSSCIHCHEVIVSGKRWFCTECKKFQECERCHSSEEHTSKNGEVHTLCQASVDDIPSDTKRNDIVLESELFENRDNFLIFCQKSQFQFDTLRRAKYSSMMILYHLHNPTVMMTQNEHQLSQNCSTPVCQSGNQESNEEMKVKLLNILKHASQCRATKSEPCSHPNCSQIKKLFSHASKCEIRVNGGCQHCKKIWFILTAHSRNCKDSECRIPRCSDLKKHVEQKSMHSES* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2943 1009 Gene3D TAZ domain 908 1009 IPR035898 -
Mtr5g2943 1009 SMART KAT11_2 501 790 IPR013178 GO:0004402|GO:0006355|GO:0016573
Mtr5g2943 1009 Pfam TAZ zinc finger 922 993 IPR000197 -
Mtr5g2943 1009 SUPERFAMILY RING/U-box 758 818 - -
Mtr5g2943 1009 Gene3D - 776 824 IPR043145 -
Mtr5g2943 1009 PANTHER CBP/P300-RELATED 203 998 IPR013178 GO:0004402|GO:0006355|GO:0016573
Mtr5g2943 1009 SMART TAZ_2 913 994 IPR000197 -
Mtr5g2943 1009 SUPERFAMILY TAZ domain 920 997 IPR035898 -
Mtr5g2943 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 453 IPR013083 -
Mtr5g2943 1009 SMART PHD_3 377 450 IPR001965 -
Mtr5g2943 1009 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 466 889 IPR031162 GO:0004402
Mtr5g2943 1009 MobiDBLite consensus disorder prediction 273 291 - -
Mtr5g2943 1009 SUPERFAMILY FYVE/PHD zinc finger 412 452 IPR011011 -
Mtr5g2943 1009 PANTHER HISTONE ACETYLTRANSFERASE HAC2 203 998 - -
Mtr5g2943 1009 ProSiteProfiles Zinc finger ZZ-type profile. 778 834 IPR000433 GO:0008270
Mtr5g2943 1009 MobiDBLite consensus disorder prediction 269 291 - -
Mtr5g2943 1009 CDD PHD_HAC_like 377 449 - -
Mtr5g2943 1009 Pfam Histone acetylation protein 503 715 IPR013178 GO:0004402|GO:0006355|GO:0016573
Mtr5g2943 1009 ProSiteProfiles Zinc finger TAZ-type profile. 911 996 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2943 Mtr-Chr5 38044720 38049422 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Mtr5g2943 HAT_KAT11 2.5e-28 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2943 K04498 - aprc:113866525 997.653