Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2942 ATGCAACAACACGTGGGAGCAGAAGTTCAACATACCCAACATAAGAAAAAGAACCAAGAAACACAGATGTGTAGGAAAATCAAACTGAATATCTCTGATCATAACAACCTCAAACAAACTACAACCGTTGATGATGTTGATGTTTGTGACAAAATTGACGGCGAGGATCTCTTCATTCCACCTCTCAATTTTGCTATGGTTGATAATGGCATTTTCCGTTCTGGTTTTCCTGAACCTTCCAACTTCTCTTTCCTTCAAACCCTTGGTCTTGGCTCCATCATATATTTGTGTCCTGAACCATATCCAGAAGCTAACTTGGAGTTTCTCAAGTCAAATGGGATCAAGCTTTATCACTTTGGGATTGAGGGTCATAAGGAGCCTTTTGTAAACATCCCAGAAGACACCATCCGGGAAGCACTAAAAGTTCTTCTTGATGTAAGGAACCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACAGGCTGTTTAGTCGGATGCTATAGAAAACTGCAAAAATGGTGCTTGTCGTCTGTTTTTGACGAGTACCAGCGCTTTGCAGCAGCGAAAGCTCGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCAAGCATGAAGCATTTGCCTATACCATTTTCATATTTGAAAAGGTAA 663 0.4072 MQQHVGAEVQHTQHKKKNQETQMCRKIKLNISDHNNLKQTTTVDDVDVCDKIDGEDLFIPPLNFAMVDNGIFRSGFPEPSNFSFLQTLGLGSIIYLCPEPYPEANLEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVLLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPIPFSYLKR* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2942 220 ProSitePatterns Tyrosine specific protein phosphatases active site. 153 163 IPR016130 GO:0016311|GO:0016791
Mtr5g2942 220 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 59 205 IPR029021 -
Mtr5g2942 220 CDD PFA-DSP_Siw14 57 204 - -
Mtr5g2942 220 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 11 218 - -
Mtr5g2942 220 Pfam Tyrosine phosphatase family 59 210 IPR004861 -
Mtr5g2942 220 PRINTS Plant and fungal dual specificity phosphatase signature 58 75 IPR020428 GO:0016791
Mtr5g2942 220 PRINTS Plant and fungal dual specificity phosphatase signature 95 108 IPR020428 GO:0016791
Mtr5g2942 220 PRINTS Plant and fungal dual specificity phosphatase signature 114 128 IPR020428 GO:0016791
Mtr5g2942 220 PRINTS Plant and fungal dual specificity phosphatase signature 131 145 IPR020428 GO:0016791
Mtr5g2942 220 Gene3D Protein tyrosine phosphatase superfamily 57 207 IPR029021 -
Mtr5g2942 220 ProSiteProfiles Dual specificity protein phosphatase domain profile. 63 214 IPR020422 GO:0006470|GO:0008138
Mtr5g2942 220 PANTHER TYROSINE-PROTEIN PHOSPHATASE 11 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2942 Mtr-Chr5 38036175 38040010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2942 54 220 Protein tyrosine phosphatase (PTP) family AT4G03960 76.647 4.29e-97 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2942 K18045 - gmx:100814279 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2942 5 38036175 38040010 Mtr5g2942 5 38036175 38040010 ECH