Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2938 ATGCCAGAAAATAGACAAGTTTTCAAGAATGCTGGTTCTAATCCATCTGGTGATAACATTGAAGAAGCTATTCGGCGTTTGAAAATCAATAGTACTCGAGACAGAGATGCTGTGCCTCAATCAATGCCTTATCCGGATCGACCTGGTGAACCTGACTGCGTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGCCGCTATAATCACCCTGCTAACATTTCACCTGTTACTCAATATGGTGAAGAACTTCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGAACATGTAAGTATGGATCGACATGTAAATATCATCATCCAAAAGACAGGCGAGGTGCTGCACCCGTTGTCTTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGCAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAACAGGCAGCTTCCTTTGGAGGAGCTTATCCAGTGGCTGCGTCCCCTCCCTCCACAACTGTTACTTCATCAGGTTTTCCATATGCTGGTGGTTTTCCTGCATGGTCAATGCCGAGAATGTCATATTTATCTGGACAGGCCATTCAATCTTATGTGCCTCCTTTTTTGCCTTCTTCACAAGGCATTATGCCTGCGCTCAGCTGGAGCAATTACATGGGAAGTATTAACCCTGCAATGCCTACTGGTTTTATTGGATCTAATCTTGTCTACGACTACATGAATCCGGCGGGAGAGACACTTTCTGGTGGACAGGCAATGAATTCATCTCTTCCAGATAGACCAGAGCAACCAGACTGTAAATACTTTATGAGCACCGGAACATGCAAATATGGATCTGATTGCAAGTTCCACCACCCTAAAGAAAGGATAGCACAAACATTATCAATTAATCCACTCGGTCTTCCTATGAGACCTGGGAATGCTATATGCTCTTATTACAGAATCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAGTTGTGGCTATCTCTCAGAACTACGGCTTGCCCTCGCCTACTCTATCAGTATTCGATGCATCTCTCCTTACTAATCCAAGAAGGCTTTCAACTGTCCAACCAGCCGAGACATCTCCATCGAAACAATCAACTGACAAGCTTCAACAATCTGATACAAAAGCTGCTACCGAAGATTCATCTAAACAAGCTGACAGTACATCAACTTCTCGCACACCTTCGACCGAGTCTTTACAGGAATAA 1269 0.4358 MPENRQVFKNAGSNPSGDNIEEAIRRLKINSTRDRDAVPQSMPYPDRPGEPDCVYYLRTGMCGYGSNCRYNHPANISPVTQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQAASFGGAYPVAASPPSTTVTSSGFPYAGGFPAWSMPRMSYLSGQAIQSYVPPFLPSSQGIMPALSWSNYMGSINPAMPTGFIGSNLVYDYMNPAGETLSGGQAMNSSLPDRPEQPDCKYFMSTGTCKYGSDCKFHHPKERIAQTLSINPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVAISQNYGLPSPTLSVFDASLLTNPRRLSTVQPAETSPSKQSTDKLQQSDTKAATEDSSKQADSTSTSRTPSTESLQE* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2938 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 343 IPR000571 GO:0046872
Mtr5g2938 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Mtr5g2938 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Mtr5g2938 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 300 IPR000571 GO:0046872
Mtr5g2938 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Mtr5g2938 422 MobiDBLite consensus disorder prediction 1 20 - -
Mtr5g2938 422 PANTHER PROTEIN PHOSPHATASE RELATED 3 407 - -
Mtr5g2938 422 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Mtr5g2938 422 Gene3D - 271 355 - -
Mtr5g2938 422 Gene3D - 46 120 - -
Mtr5g2938 422 SUPERFAMILY CCCH zinc finger 318 344 IPR036855 GO:0046872
Mtr5g2938 422 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Mtr5g2938 422 SUPERFAMILY CCCH zinc finger 277 302 IPR036855 GO:0046872
Mtr5g2938 422 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 3 407 - -
Mtr5g2938 422 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Mtr5g2938 422 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Mtr5g2938 422 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Mtr5g2938 422 Gene3D - 121 166 - -
Mtr5g2938 422 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Mtr5g2938 422 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Mtr5g2938 422 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Mtr5g2938 422 MobiDBLite consensus disorder prediction 373 422 - -
Mtr5g2938 422 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Mtr5g2938 422 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Mtr5g2938 422 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Mtr5g2938 422 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Mtr5g2938 422 SMART c3hfinal6 273 300 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2938 Mtr-Chr5 37971249 37975746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2938 1 403 C3H Transcription Factor Family AT1G04990 44.893 1.93e-116 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr5g2938 zf-CCCH 9.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2938 - - vra:106765262 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2938 5 37971249 37975746 Mtr5g2938 5 37971249 37975746 ECH