Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2935 ATGGATCGAGTGAAAGCAGAACTGGAGAAAAGTGCTGGGAAGGAAATCCGTTACCGCGGTGTGAGGAAGCGAAAACACAAATATGGTGCAGAAATTCGAAACCCCTGGAAAAAACAATGTGAATGGTTAGGCACTTACAATACTGCAGAGCAAGCAGCCCGAGCTTACGATGCAGCAGCTATTTCATTCCGTGGGGTCAATGCCATTACAAACTTCCCAATACCTTACAATATTGCTTCTACTGCTATGAGTAGTACTGCTGAAGCATCTAGGGTTGTTGTTGGTTCTTCAACAATTGTTTCTAGGGTTCTTGCTGCTACTCCTAGACCTCTTGTTGCTGCTGAAGGTTGTCACAGTAAATGTGATTCTTCTTCTGTTGCGGATGATGAAGATGAAGATTGTGTTATCATTTCTTCTTCAGCTCGGAAACCTTTAAACATTGATCTCAATTTCCCCCCTCCACCAAATTTTAATGATGATGAAGAGATTCGCGCCACTACCTTGTGCCTCTCACTTCCCGCTGCTACCCCCCGCCAATGA 540 0.4444 MDRVKAELEKSAGKEIRYRGVRKRKHKYGAEIRNPWKKQCEWLGTYNTAEQAARAYDAAAISFRGVNAITNFPIPYNIASTAMSSTAEASRVVVGSSTIVSRVLAATPRPLVAAEGCHSKCDSSSVADDEDEDCVIISSSARKPLNIDLNFPPPPNFNDDEEIRATTLCLSLPAATPRQ* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2935 179 SMART rav1_2 17 79 IPR001471 GO:0003700|GO:0006355
Mtr5g2935 179 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Mtr5g2935 179 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Mtr5g2935 179 CDD AP2 17 74 IPR001471 GO:0003700|GO:0006355
Mtr5g2935 179 ProSiteProfiles AP2/ERF domain profile. 17 73 IPR001471 GO:0003700|GO:0006355
Mtr5g2935 179 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
Mtr5g2935 179 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Mtr5g2935 179 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 144 - -
Mtr5g2935 179 SUPERFAMILY DNA-binding domain 17 74 IPR016177 GO:0003677
Mtr5g2935 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 11 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2935 Mtr-Chr5 37936500 37937039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2935 6 155 AP2-EREBP Transcription Factor Family AT1G28370 41.975 1.44e-24 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g2935 AP2 7.8e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2935 K09286 - jre:108995850 114.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2935 5 37936500 37937039 Mtr5g2935 5 37936500 37937039 ECH