Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2934 ATGTGTCGAGTGAAGGCAAAACCAAGTGCAACGAAGGAAATTCGTTACCGCTGCGTGAGGAAGACAAAATATGGTTGTAATTGTGCAAAAATTCGAGACCCATGGAGAAAACCATATGTATGGTTAGGCACTTTTGATACAGCTGAACAAGCAGCTCAAGCTTATGATGCCACAGCCACTTCATACCGTGGGAACAATGCCATAACAAACTTCCCAATACCTTACAATGCCGCGAACAGTGTTGTTGAAGCATCTAGGGTTGCTGTTGGTTCTTCTTCAACCGTTGTTTCTAGGGTTCCTGTTGCTACTTCTATACCTGCTATTGTAGGTGAAGATCGTCACAATGATTTTGATGCTTCTTCTGTTGATGTGGATGATGATGAAGAAGATTGTGTTATCACTTCTTCATTTCGGAAGCCTTTAAACATTGATCTCAATTTCCCTCCTCCACCAAATTTCAATGATGATGAAGAGATTCGCGCCACTACCTTGCGCCTATCACTTCCCAGCTAG 513 0.4269 MCRVKAKPSATKEIRYRCVRKTKYGCNCAKIRDPWRKPYVWLGTFDTAEQAAQAYDATATSYRGNNAITNFPIPYNAANSVVEASRVAVGSSSTVVSRVPVATSIPAIVGEDRHNDFDASSVDVDDDEEDCVITSSFRKPLNIDLNFPPPPNFNDDEEIRATTLRLSLPS* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2934 170 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Mtr5g2934 170 CDD AP2 15 73 IPR001471 GO:0003700|GO:0006355
Mtr5g2934 170 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 136 - -
Mtr5g2934 170 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Mtr5g2934 170 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
Mtr5g2934 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF069 9 136 - -
Mtr5g2934 170 Pfam AP2 domain 16 64 IPR001471 GO:0003700|GO:0006355
Mtr5g2934 170 SUPERFAMILY DNA-binding domain 16 73 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2934 Mtr-Chr5 37933600 37934112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2934 4 73 AP2-EREBP Transcription Factor Family AT1G50640 58.571 2.81e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr5g2934 AP2 1.5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2934 K09286 - jre:109006068 98.9821