Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2933 ATGGTTCGAGGGAAAGGGAGAGATTATATGCCGAGAAAGAAAATCGTCAATTCCGCGGCATCGACGGCGGTGAAAATATCAAAAGCGGCAGACCCGATGAAAAGCTCGGTTACCGCGGCGGTTAAAGAAATCCGGTACCGCGGTGTAAGGAAGCGACCATGGGGTCGATTCGCTGCTGAGATTAGAGATCCCTGGAAGAAAGCTCGAGTCTGGTTGGGGACCTTTGATACCGCTGAAGAAGCTGCACATGCTTATGATTCAGCCGCGATTAAATTTCGCGCTTCGAAGGCGAAAACTAATTTCCCTATCCCTGAACATATCCTTGCGGCTGAGACTGCAGCTGCGGCCGCTCAGAATCCTCAGCCTTTGGTTGCTGTTGATAACCGTCGGGCTGAGGTTTTGAAATTTGTTGAACCTGAAGTTGTTCAGGTTAATTGGCCTACTTCAAGCAGTATGAGTAGTACTGTTGAATCTTTGAGTGGGCCTAGGATTGTTCAGGTTGTTGGTTCTTCGTCTTCTTCTGCTGTTTCCAGGGTTCCTATTGTTGCTGGTGCTGGTGGTGGAGCTGCTCAACCTGTTGGTGCTGCTGCTGCTCGTGCTGGCAAAAAATTTCATAGTGGCTGTGATTCATCTACATCTGCTGTTGATGATGACGAAAATTGTGTTATTCTCAGTTCTTCTACTGCTTCAGTGAGGAAGCCTATGGTCCAGGCTCCGGCCCAGGCTCATGTTCATGCTCCCGCTCAGGTTCCGGCTCAGGTTCAGGTTCCGGCGCAGGCTCAGGCTCAGGCTCAAGTTCAAGCTCTGGTGTTTGCTATTGATCTGAATTTGCCTCCTCCGATGGATGATGAATAA 855 0.4971 MVRGKGRDYMPRKKIVNSAASTAVKISKAADPMKSSVTAAVKEIRYRGVRKRPWGRFAAEIRDPWKKARVWLGTFDTAEEAAHAYDSAAIKFRASKAKTNFPIPEHILAAETAAAAAQNPQPLVAVDNRRAEVLKFVEPEVVQVNWPTSSSMSSTVESLSGPRIVQVVGSSSSSAVSRVPIVAGAGGGAAQPVGAAAARAGKKFHSGCDSSTSAVDDDENCVILSSSTASVRKPMVQAPAQAHVHAPAQVPAQVQVPAQAQAQAQVQALVFAIDLNLPPPMDDE* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2933 284 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Mtr5g2933 284 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 38 232 - -
Mtr5g2933 284 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Mtr5g2933 284 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Mtr5g2933 284 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 38 232 - -
Mtr5g2933 284 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Mtr5g2933 284 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Mtr5g2933 284 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Mtr5g2933 284 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Mtr5g2933 284 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2933 Mtr-Chr5 37920878 37922015 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2933 35 182 AP2-EREBP Transcription Factor Family AT1G50640 53.333 1.64e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr5g2933 AP2 7.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2933 K09286 - cpap:110808864 157.147