Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2931 ATGGTTCGAGTTAAGGGAAGAGATTATATGCCGAGAAAGAAAATCGTAAATTTACCAGTGGTAGCTCGATACGCCGCGGGATCTACAGCGGTGGGAAAATCAGAAGCGGCAGAACCGATGAAGAGCTCGGTTACGGTGAAAGAAATCCGCTACCGCGGCGTTAGAAAGCGACCATGGGGTCGATTCGCTGCTGAGATTAGAGATCCCTGGAAGAAAACCCGTGTATGGTTAGGGACTTACGATACCGCAGAACAAGCCGCACTTGCGTATGATTCAGCCGCGATTAAATTTCGCGCTTCGAAGGCGAAAACTAATTTCCCTATTCCTGAACATATTCTTGCGGCTGCGGCTGAGACTGCAGCCGTGGCCGCTCAAAATCCTCAGCCTCCGGCTGCTGTTGATAACCGGCCGGCTGAGGTTTTGAAATTTGTTGAGCCAGATGTTGTTCAGGTTAATTGGCCTACTTCAAGCGGTATGAGTAGTACCGTTGAGTCTTTCAGTGGGCCTAGGATTGTTCAGCTTGTTGGTTCTTCGTCTTCTTCTGTTGTTTCCAGGGTTCCTACTGTTGGTGGTGGTGCTGGTGGTGGAGTTGCTCAAGCTGTTGGTGGTGCTGGTGCTGGTGCTGGTGAAGATTTTCATAGTGGTTGTGATTCATCTTCATCTGTTGTTGATGATGACGAAGATTGTGTTATTCTCAGTTCTTCTGCCGCTTCAGTGAGGAAGCCTCCGGTCCAGGCCCATGCTCTGGCCCAAGCTCAGGTTCATGCTCAGGCTCAGGTGTTTGCTATTGATTTGAATTTACCTCCACCAATGGATGATGAAGAAGTGATCCGCGTCACTACCCTGTGTCTCTGA 855 0.4959 MVRVKGRDYMPRKKIVNLPVVARYAAGSTAVGKSEAAEPMKSSVTVKEIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTYDTAEQAALAYDSAAIKFRASKAKTNFPIPEHILAAAAETAAVAAQNPQPPAAVDNRPAEVLKFVEPDVVQVNWPTSSGMSSTVESFSGPRIVQLVGSSSSSVVSRVPTVGGGAGGGVAQAVGGAGAGAGEDFHSGCDSSSSVVDDDEDCVILSSSAASVRKPPVQAHALAQAQVHAQAQVFAIDLNLPPPMDDEEVIRVTTLCL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2931 284 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 44 238 - -
Mtr5g2931 284 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Mtr5g2931 284 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Mtr5g2931 284 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Mtr5g2931 284 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Mtr5g2931 284 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Mtr5g2931 284 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 44 238 - -
Mtr5g2931 284 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Mtr5g2931 284 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Mtr5g2931 284 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2931 Mtr-Chr5 37907783 37909198 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2931 23 189 AP2-EREBP Transcription Factor Family AT1G50640 47.399 1.09e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g2931 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2931 K09286 - twl:120001102 171.785