Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2929 ATGGAAAATTCAGATCACGACGAACCAGACAAGAAGAAGCCTCATCTTCTCACTCCTATTTCTTCCCGCGTCTCACGAAATTCAAGCAACCATTCTCCTAACAGTAAAACTGCTGATGCAGGTGTCTTACAGCTCCAGAATCAGCAGCTTGTTCAGCAGACAGAAGTCCAGAAACAGGCTATACAAGACCTTGAAGAAAAAACTAAAGAATTAAAAGAAAGACAAAATTCGTACGATGACATATTAATTGCAATAAACCAACACTGGGATCAGCTGGTTGATGATATGGCTCTTCTCGGGATACAAGCTGGGAGAGGAAAAGATTCTTTGAAAACTTTGGATTACCTTGATAATCCTCAAGATTCCTTTCCTTCGTGTCCTCCGGATGATCTACTTCTATGTAGATTAATCCAGAAAGATTCTTTGGAGGGAGGCAGTAATGATGAGATTACTAATTATGTTGAGGAAGCCCTTGCTTTGCGTCGGTTATCTACCAGGGAGTTGTTGAAACTCATTCAAGATACTGTTGATGATCATATGGAAAGAATTGAGAATATAGGTCAGGTTTTACACGAAGATTTATCCACGGAAGATGTTATCATCAAAATGTCTAAGATTGATGATATGACGAAAAAGGAATCCAACAATTTTCGTGAAGTGATTGATACTCTCCATGCAAAACACAAGGAGTATACTGTTGGTATACAGAATTATATAGACGAGTGCTTACGAGATCAATCTGACATAAGACACCTTACAGGAGAGTTTGACGAAATCGTGGCCGAACTTGAAGAGAGTAGAAGAAAACTAGTCAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAATGCTGATGCAGTGAACGGAAAAGTGTCTCCTGAGAAGCCTGCAGAGAGAGCTATGGGTTTGTCTGAGTTGAAGAATTCAATTGAGGAAGTGAAGATAGTGAATGCTGATCGTCTTTCTGAGCTTCAAGATTCAGGGGAAGAAAATCAAATATTGACAAAGCAATTTGAGGAACTTCAGAATGAACTAAATGATGATAAGTATGTACGCACTTCCCGAGTATACTCTTTGGCAAAGGATCAACTTCAACATTGGATTGCTGAATTGGATAGATTTAAATCATTGACAGAGTCTCTGCAGGCTAGCAGGACTAACATTGCAAAACGGGAGAAGGAATTGAATTCTAAATTGGAGTCTGCGGTTAATGCAAGGCATATCCATGACATTTCTGACTCTAGGACTGATGAGCTCAAGATTCAGTTGCAAAAGTGTATTAATGAAAGGAATGATCTTGAAATCAAGATGGAAGAGGCCAAACAAGATATTGGGAGAAAAGATATCAAAGCTGAGTTTGGTGTGATGTCTTCAGCCTTATCTAAAGAAATGGGGATGATGGAAACACAGTTGAAGCGATGGAAAGATGCAGCTCATGAAGCTGTATCATTGCGTGCGAAAGCACATTCGCTAAGAGAGAAATTGAGTGGGAAGACAAGCGAACTCAAGAGCCTTGCAAACAAATGTGCTGAGCAGGATTCGGAAATAAAGTCGTCAAAAGCAATGATTGAAAAGTTACAGGAGGAGAACCAGGAGTTAGAATTTGTTTTGGATATGTATGGTCTGGAGGATTATCAGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAGTAAAGCACACTCTCAAGCTGAAATGCTTAAAAAAGCCTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCTGCAGAAGCTGAAATAGAAGAGTTAAGGGCCCAGCTTGATGCAAATGAAAGGAAAAAATTGGAGATGACCGAGGCTATTAAAGCTAAAGAGGCTGAGGCAGAAACCTATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACGTCTATTACAGCAAGTGGCTGAGAGGGATGACTGTAATATCAAGCTTGTATCAGAAAGCATGAAGGCAAAACATTTACATAGCACTTTATTGTCTGAAAAGCAAGCCTTCGTTGATCAACTTCAAAAGATTAATTCTTTGATAGAAAATTCAAAGAAGAGGATTGCAAATAGTGAAGAACAGATCAAACACATTCTATCAGAAGCTGCTAAATGTACTCACGATGAAAAACACCTCGCAGCCGCCTTAGAGTTTGCCAGGTGGGAATTGGCAGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTGTTGCTTCAGCTTCAGAGAAAGAGTACGAGCAGATTCAGAAAGATGTGGAAGCTTTTGAAAAGGAATTGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGGAAGTGAATAACCAAATTACTGAGCTGAATTCTGATGCCAAAAAAACTGCAGTACAACAACTTGAAGAAGAAATCAGAGTTTGCAAAAACATGATCAAGTGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTGTGAAGTGCTATCATTTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGTGATGTTCGCTTTGTTAAAATATGA 2643 0.3984 MENSDHDEPDKKKPHLLTPISSRVSRNSSNHSPNSKTADAGVLQLQNQQLVQQTEVQKQAIQDLEEKTKELKERQNSYDDILIAINQHWDQLVDDMALLGIQAGRGKDSLKTLDYLDNPQDSFPSCPPDDLLLCRLIQKDSLEGGSNDEITNYVEEALALRRLSTRELLKLIQDTVDDHMERIENIGQVLHEDLSTEDVIIKMSKIDDMTKKESNNFREVIDTLHAKHKEYTVGIQNYIDECLRDQSDIRHLTGEFDEIVAELEESRRKLVSLKMQKDAAMGMNSSNADAVNGKVSPEKPAERAMGLSELKNSIEEVKIVNADRLSELQDSGEENQILTKQFEELQNELNDDKYVRTSRVYSLAKDQLQHWIAELDRFKSLTESLQASRTNIAKREKELNSKLESAVNARHIHDISDSRTDELKIQLQKCINERNDLEIKMEEAKQDIGRKDIKAEFGVMSSALSKEMGMMETQLKRWKDAAHEAVSLRAKAHSLREKLSGKTSELKSLANKCAEQDSEIKSSKAMIEKLQEENQELEFVLDMYGLEDYQKSLPEVRESESKAHSQAEMLKKALDEHGLELRVRAANEAEAACEQRLSAAEAEIEELRAQLDANERKKLEMTEAIKAKEAEAETYISEIETIGQAYEDMQTQHQRLLQQVAERDDCNIKLVSESMKAKHLHSTLLSEKQAFVDQLQKINSLIENSKKRIANSEEQIKHILSEAAKCTHDEKHLAAALEFARWELADAEKELKLLKSVASASEKEYEQIQKDVEAFEKELDSERSSRKKLEEELMEVNNQITELNSDAKKTAVQQLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2929 880 Gene3D - 687 825 - -
Mtr5g2929 880 Coils Coil 249 276 - -
Mtr5g2929 880 Coils Coil 47 81 - -
Mtr5g2929 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 25 880 - -
Mtr5g2929 880 Coils Coil 695 722 - -
Mtr5g2929 880 SUPERFAMILY RING/U-box 827 871 - -
Mtr5g2929 880 MobiDBLite consensus disorder prediction 1 38 - -
Mtr5g2929 880 Coils Coil 420 454 - -
Mtr5g2929 880 CDD RING-HC_BRE1_like 826 867 - -
Mtr5g2929 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Mtr5g2929 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 826 878 IPR013083 -
Mtr5g2929 880 Coils Coil 583 631 - -
Mtr5g2929 880 PANTHER RING FINGER PROTEIN-RELATED 25 880 IPR013956 GO:0004842|GO:0010390
Mtr5g2929 880 MobiDBLite consensus disorder prediction 20 38 - -
Mtr5g2929 880 Coils Coil 513 547 - -
Mtr5g2929 880 MobiDBLite consensus disorder prediction 1 17 - -
Mtr5g2929 880 SMART ring_2 828 866 IPR001841 -
Mtr5g2929 880 Coils Coil 328 348 - -
Mtr5g2929 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Mtr5g2929 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Mtr5g2929 880 Coils Coil 737 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2929 Mtr-Chr5 37856423 37879708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2929 802 875 RAD5 or RAD16-like Gene Family AT5G05130 26.506 5.59e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2929 K10696 - gmx:100796610 1226.46