Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2923 ATGGGAACTCTTTCACTTTCTCTGCATAATCTCAACCTCTTTTTTCTCTACAACCCCAATTCCACACCCCAAAACTCCAATTTCTCTCACCAAAACCCCAATTTCTTGCGCCAAAACCCATCTTCTTCCATTTCTTTCAAAAATTCCATCTTGAACTGTTCAAAATCCACACAAATTCCCGCTCTTTCTCCACCAATTTACATCAAACGCGCCACGAAAATCCAAGCACAACGCGCTCTATTTGAATACCTTCACTACACACAAAACTACACTTTCTCTGACGCTGAATTCATCTCCAAAAACTCTCCACATTTCATCGATTTCCTCATCTCCAAAATCAACATCCCTGACGATGGCGACGTTTTTCGTGCTCTCAGTAGGTATCTTATGTATCACCCCATTAACGAATTTGAACCTTTTTTAGAGAGTTTAGGAATTAATCACACGAAATTGGAAAAATTTCTACCTAAAGGTTGCTATTTTCTTTGTGATGATAGTGTTTTAGTTGATAATTTTCATGTATTGTGTTATCATGGGGTTCCGAGGAATCGAATGGCGAAGATTTATACAGAAGCAAGAGAAATTTTTGGGTATGGAAATGGAGTTTTGGAAAAGAAATTTCAAGCTTATGAAGATTTGGGTTTGAGTAAATCATCTCTTATCAAGCTTTTTGTTTGTTGTCCTTTGCTTTTGGTTGGTGATGTTGATTCTGAGTTTGTTGTTGTTCTTGATTGGTTGAAAAGAATTGGGATTGAGAGTAAATGGTTTGTGAATTGTATGTCTAGTTCAAACACTTATAGCTGGAAAAGAATGATTGAGACTTTAGAGTTTTTTCATCAAGTGGGTTATTCTGAGAAACATATGTATGATTTGTTCAAGGTGGATCCGAATTTGTTGTTGGAAGGTTTAGGGAGGAAGCTGTACTTGTTTTTAGGTCGGTTTATTAAGTCGGGTGTTGACGTGAATGTTGTCTGTTCTTGTTTCATAGAGCATTCTGATATGTTGTCGAGTAAGCGTGTGGAAAATTTGATGAGCGTTATTTCTTTTCTGTATAATATTCGAATGGAACAAGATGATATTGCACATGTTTTGTCTAACTACATGCATATCTTGAGCAAACATTCGATAAAAGGTTATAGAGCGGTTTGTATGGAGTTAGGAGTTCCAAAAGCTGATTTATGCAGAATCATAAACGATGATCCATTGGAGCTTATTAGTTTGGCTTGTAAACAGAAACATAAAAGGAGTGGAGGGCAATCCTATTGTGTCCCGCTTAGTAAATTGGAGAAAACGGCCTTCTTGCTGAAACTTGGGTATATTGAAAACTCTGAGGAGATGGAAGAAGCAGTAAAATTGTTTCCAGGGAGAGGTGATCAGTTACAGGAGAGATTGGATTGCCTGGTAGAAGCTGGTTTGGATTGTAGCACTGCGATTAGAATGGTAAAGCGAGTTCCTAAGATTCTAGTCCTGAAGAGAAATGTAATTCAAAAGAAGATTGATTTCTTAAAAAACACTTTAGGTTACCCGATAGAATGTCTTGTGAGATACCCAACATACTTTTTACAGGACGTGGACAGAATGAGTGCAAGAGTTTCAATGTATGAGTGGTTGAAGGAAAGGAATGCAGTAAGTCATGCGTTATCCTTGAGTACCATAGTTTCATATGATGAAAAACGGTTTGTACAAGTCTTTGTGAATATGCATCCTGAAGGTCCAACAATCTGGCAACGTATAAAAACTTTATCAAACAAAGATAAGAATTATCAGCTCCTTACATGA 1779 0.3716 MGTLSLSLHNLNLFFLYNPNSTPQNSNFSHQNPNFLRQNPSSSISFKNSILNCSKSTQIPALSPPIYIKRATKIQAQRALFEYLHYTQNYTFSDAEFISKNSPHFIDFLISKINIPDDGDVFRALSRYLMYHPINEFEPFLESLGINHTKLEKFLPKGCYFLCDDSVLVDNFHVLCYHGVPRNRMAKIYTEAREIFGYGNGVLEKKFQAYEDLGLSKSSLIKLFVCCPLLLVGDVDSEFVVVLDWLKRIGIESKWFVNCMSSSNTYSWKRMIETLEFFHQVGYSEKHMYDLFKVDPNLLLEGLGRKLYLFLGRFIKSGVDVNVVCSCFIEHSDMLSSKRVENLMSVISFLYNIRMEQDDIAHVLSNYMHILSKHSIKGYRAVCMELGVPKADLCRIINDDPLELISLACKQKHKRSGGQSYCVPLSKLEKTAFLLKLGYIENSEEMEEAVKLFPGRGDQLQERLDCLVEAGLDCSTAIRMVKRVPKILVLKRNVIQKKIDFLKNTLGYPIECLVRYPTYFLQDVDRMSARVSMYEWLKERNAVSHALSLSTIVSYDEKRFVQVFVNMHPEGPTIWQRIKTLSNKDKNYQLLT* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2923 592 SMART mt_12 478 509 IPR003690 GO:0003690|GO:0006355
Mtr5g2923 592 SMART mt_12 186 216 IPR003690 GO:0003690|GO:0006355
Mtr5g2923 592 SMART mt_12 325 356 IPR003690 GO:0003690|GO:0006355
Mtr5g2923 592 SMART mt_12 510 543 IPR003690 GO:0003690|GO:0006355
Mtr5g2923 592 SMART mt_12 221 252 IPR003690 GO:0003690|GO:0006355
Mtr5g2923 592 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 54 579 - -
Mtr5g2923 592 PANTHER CGI-12 PROTEIN-RELATED 54 579 IPR003690 GO:0003690|GO:0006355
Mtr5g2923 592 Pfam mTERF 172 299 IPR003690 GO:0003690|GO:0006355
Mtr5g2923 592 Pfam mTERF 459 560 IPR003690 GO:0003690|GO:0006355
Mtr5g2923 592 Pfam mTERF 275 420 IPR003690 GO:0003690|GO:0006355
Mtr5g2923 592 Gene3D Transcription termination factor 3, mitochondrial 122 252 IPR038538 -
Mtr5g2923 592 Gene3D Transcription termination factor 3, mitochondrial 306 577 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2923 Mtr-Chr5 37800294 37804715 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Mtr5g2923 mTERF 7.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2923 - - gmx:100803162 640.958