Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2887 ATGTCCAGAGAAAGGGGGAGATTTTTTGATGAGATAGGAAAGAAGAGGGAAGGTGATGAGTCTTTTCAAAAGGGAAGAATGTTAGGTCCTTCAGGAACACTAAATACAACTACTCCTTGTGCTGCATGCAAGCTTTTGAGACGAAGGTGTGCCCAAGAATGCCCTTTTTCTCCATATTTCTCTCCTCATGAGCCTCAGAAGTTTGCTTCTGTCCACAAAGTCTTTGGTGCTAGCAACGTCTCAAAGTTGCTATTGGAGGTACCAGAGAATCAAAGAGCAGATGCAGCAAATAGTTTAGTTTATGAAGCAAATGTAAGACTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCATCTTTGCAACAACAAGTTCAATCATTAATAGGTGAACTTAATGCTATAAGGGAAGAAATACATAAATACAAACTCATGGAAGCTAATATGCTTCCTTCTTCAGAGGATGTATCAATTGCTACTCTTCCACCTTCAACATCATTACCAATGCTTCCTTCTTCCATTTACACACAACAGACAAATCCTACCAGTTATAGCTCAATTTCGAATGATCATATTTCCTATTTTGATTAA 591 0.3841 MSRERGRFFDEIGKKREGDESFQKGRMLGPSGTLNTTTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLLEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQSLIGELNAIREEIHKYKLMEANMLPSSEDVSIATLPPSTSLPMLPSSIYTQQTNPTSYSSISNDHISYFD* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2887 196 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
Mtr5g2887 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 196 - -
Mtr5g2887 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 24 196 - -
Mtr5g2887 196 Pfam Lateral organ boundaries (LOB) domain 39 135 IPR004883 -
Mtr5g2887 196 Coils Coil 118 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2887 Mtr-Chr5 37430057 37431836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2887 27 157 AS2 family AT2G40470 79.851 1.16e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr5g2887 LOB 2.4e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2887 5 37430057 37431836 Mtr5g2887 5 37430057 37431836 ECH