Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2880 ATGGCCTCAGAACTCATCAGAATTTGTAGCAAAAGGAAAAGAGAGAGATTTAGAAAGAGAAAACACAAAAAAATGGTTTCTAGGGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTGTTACTAACTCTCATGCTCTAAATGATACCTCGATCGTAATCGATGCATCAAAGTATATTGAAAATCTAAAGGAAAAGGTAGAAAGACTGAATGAAGAAATAGCTTCTGCAGAAAGTTCAAGTGTCCACAATCCCAATTTGCCTATGGTTACAGTTGAAACCCTAGAAAAGGGATTTCTTATAAACGTTTTTTCAGCAAAAAGCAGCCAAGGTATGCTTGTTTCAATACTTGAAGCCATTGAAGAGATGAGGCTTACAGTGCTGGAAGCTAGGGTTTCTTGTACAGACAATTTTTGTTTCCAAGCTGTTGGAGAAGAGAATGAAGAACAAGGTGATACTATTGATGCACAAGCTGTGAAACAAGCAGTGGGACAAGCAATAAAAAATTGGAGTGAAAGTTCCGATTAA 540 0.3796 MASELIRICSKRKRERFRKRKHKKMVSREQKRAALHEKLQLLRSVTNSHALNDTSIVIDASKYIENLKEKVERLNEEIASAESSSVHNPNLPMVTVETLEKGFLINVFSAKSSQGMLVSILEAIEEMRLTVLEARVSCTDNFCFQAVGEENEEQGDTIDAQAVKQAVGQAIKNWSESSD* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2880 179 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 26 178 - -
Mtr5g2880 179 Coils Coil 57 84 - -
Mtr5g2880 179 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 26 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2880 Mtr-Chr5 37355099 37357550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2880 11 167 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 27.545 1.40e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2880 - - gmx:100306253 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1766 7 33671045 33674022 Mtr5g2880 5 37355099 37357550 ECH
Mtr3g1803 3 30491952 30493262 Mtr5g2880 5 37355099 37357550 ECH
Mtr5g2880 5 37355099 37357550 Mtr5g2880 5 37355099 37357550 ECH