Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2868 ATGAGGTATTTTAAAGGTACAACTGATTATGGTGTGGTGTATCCTAAGCCAAATGATGAAGGAAAGAAGCTAATTGGTTACCATGTCTCAAACTGGGGCTATCAAGATACACTATATGTAGACCAGGGCTACCAGTTCTACCGCAACTGCAAGACTTATGGAACCATCGACTTTATATATGGTCATTCAACTACCTTGATCCAAAACTCAACAATTTTGGTGAGAAAGCCTGCTCTAGGACAGTCGAATGTCGTGGTGGCAGATGTCACAAACATAAACACCAATTTAAGTACCGACATAGTGCTTCAGAACTACTCTATAAGTCCAAATGTTGAGCTCACACCATTTCCGCCAACAGTGAAGACATACTTGGCAAGACCATGGCAAGCATTTTCAACAGCAGTCTTCCTTAACAATTATATTGATGATTTTATCCATCAAGATGGATATATGATTTGGACAAAAGATTAA 471 0.3907 MRYFKGTTDYGVVYPKPNDEGKKLIGYHVSNWGYQDTLYVDQGYQFYRNCKTYGTIDFIYGHSTTLIQNSTILVRKPALGQSNVVVADVTNINTNLSTDIVLQNYSISPNVELTPFPPTVKTYLARPWQAFSTAVFLNNYIDDFIHQDGYMIWTKD* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2868 156 PANTHER PECTINESTERASE 27 154 - -
Mtr5g2868 156 Pfam Pectinesterase 27 155 IPR000070 GO:0030599|GO:0042545
Mtr5g2868 156 Gene3D - 17 156 IPR012334 -
Mtr5g2868 156 PANTHER PECTINESTERASE 27 154 - -
Mtr5g2868 156 SUPERFAMILY Pectin lyase-like 23 154 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2868 Mtr-Chr5 37267866 37271502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2868 21 153 Carbohydrate Esterase AT2G47030 48.120 6.61e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2868 - K01051 mtr:MTR_5g083590 209.92