Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2857 ATGGGTGCTCCTGCTTATGATCAATGTTTTAATGTTTCTCTTGCGCCATTGGAATTATCGAAAAAGAGGAAAACTAGGAGTAGAGGAAAAGGAACTAAATCTGTGGCTGAGACTCTAGCAAAATGGAAGGAATACAATGAGAAGCTTTATGCTGGTAAAGATGATGGTAAACCAAAGCGTAAAGCACCGGCTAAAGGTTCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGACCTCAAAACTCGGAGAATAAGTATCGAGGTGTTAGACAGAGGACTTGGGGGAAATGGGTTGCTGAGATTAGGGAACCAAATAGAGGAAGTAGACTTTGGTTAGGTACTTTTCCGACGGCTCAAGAAGCTGCTCTTGCTTATGATTATGCTGCTAGAGCCATGTATGGTCCTTCTGCGCGACTTAACTTTCCTGATATCTCAGATTATAGATCTATTCAGGAATATTTGAAGGATTCTTCAGCAGCAGCTGCTAGCTGTTGTTCTTCGGTGGCAACAACGCCTGCGACATCTGAGACAACAACTGTGTCTAGTCATTCTGAGGTTTGTGCTATTGAGGATGTTAAGGAGATACCTAGGATACCTGTTCATATGAACAACACTGTTGATGTTTGTTATAAAGGTTATGAAGCCACATCTCCAACTAGTAGAATGAAGCAAGAGCCAATGGATGAGCCTGATGATATCATAGACCTTGGTGGTGGTGAAATCCAAGATGCAAATTCAGAAGGAACACAAACTCTAACACAACCACAAACACATGATGCTGTGCTGGTTGGAGAGGGTGTGTGTAATGACCAGATGGATTTTTCATGGATGGATAACTTTGACTTCGATGATGATTACTTGAAGAGTTTTTCAGTGGATGAGTTCTTTCATGTGGATGATTTCTTTGAGGTGGATGAGCTTTTGGGGCAACTAGATAATAATCCGATTGATGATTCTGGGGTGATGCAAAGTTTGGATTTTGGACAAGTGGGTTTACCTGAAGAAAGTAATCCTCAGGTTGGGACTACTTCAAGCTTCTTTTATGAATTGGAAAATCCAGATGCTAAGCTGTTGGGGAGTTTGCCTCATATGGAACGCACAGCATCAGGTGTCGATTATGGATTACCTCTGAACTTCAATGGCGGTGGAGAAGATACACCGTTTCTGGATTTGGATTATGATTTAAATCACGATTCAAGAGGAATGCAGGGAAGGAAGAATGATTAG 1224 0.4158 MGAPAYDQCFNVSLAPLELSKKRKTRSRGKGTKSVAETLAKWKEYNEKLYAGKDDGKPKRKAPAKGSKKGCMKGKGGPQNSENKYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAQEAALAYDYAARAMYGPSARLNFPDISDYRSIQEYLKDSSAAAASCCSSVATTPATSETTTVSSHSEVCAIEDVKEIPRIPVHMNNTVDVCYKGYEATSPTSRMKQEPMDEPDDIIDLGGGEIQDANSEGTQTLTQPQTHDAVLVGEGVCNDQMDFSWMDNFDFDDDYLKSFSVDEFFHVDDFFEVDELLGQLDNNPIDDSGVMQSLDFGQVGLPEESNPQVGTTSSFFYELENPDAKLLGSLPHMERTASGVDYGLPLNFNGGGEDTPFLDLDYDLNHDSRGMQGRKND* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2857 407 MobiDBLite consensus disorder prediction 50 87 - -
Mtr5g2857 407 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 374 - -
Mtr5g2857 407 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 374 - -
Mtr5g2857 407 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Mtr5g2857 407 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Mtr5g2857 407 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Mtr5g2857 407 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Mtr5g2857 407 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Mtr5g2857 407 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Mtr5g2857 407 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
Mtr5g2857 407 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2857 Mtr-Chr5 37175662 37178028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2857 21 375 AP2-EREBP Transcription Factor Family AT2G40340 40.608 1.79e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g2857 AP2 7.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2857 - K09286 mtr:MTR_5g083340 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2857 5 37175662 37178028 Mtr5g2857 5 37175662 37178028 ECH