Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2856 ATGAGCAGAAAGAGGCGTCTAAATGATTCAAAGAATCCATTCAATTCTGACCCATTTGAAGCAGTTATCTTTGGCTCATGGCATCCTGTGGAGTTCATAAAAGTTAAATCAGGATCTATGAGCATTCATTTCACAGATAATCACCATATGGTTATGGACAAAGGTACTTTATCAGACATTCGTATAAGGTCAAGGAAAGCTACTGTGTCAGATTGCTCCTGTTTCTTACGTCCTGGAATCGACGTATGCGTGCTATCACCCCCTAAACGAGCCAATGATTCAGTTGGTTTAAATCTTGAGCCTGTTTGGGCTGATGCTAGAATAAGTTCTATACAGAGAAAACCCCATGGCTCAGAGTGCTCGTGTCAGTTTTTCGTCAACTTCTATGTTGAACAAGGTTCACTTGGTTTAGAAATGAGAACTCTTTGTAAGGATGTCAAAGTATTCGGACTCAATCAGATCGCCATCCTCCAAAAAATCGAACACAGTCCAGGTGAAAATCAGCCCCACCGGTGGTCTTCATCCGAGGATTCCTCTTCATTACCACACACCAAATTGCTTTTGGGAAAGTTCTTAATCGATCTTTCATGGTTAGTTGTTACATCGGTTGTCAAGAATGTTTCGTTCTGTGCAAGATCAGTAGAAAACAAGATGGTGTATCAAATTTTGGGAGGTGATAGTAGTAATAGCTCATCGTCGAACACCGAGTCTCATATTGATGTCATCGGATTCAGAACCGATGATGGCATGTTAGTACCAATTGTTTCTCAAGTTGCTATAACTAACACCAAGAGAGCTGATCATGCACATGAATCGCGTGCAGATGAAGCGTCATCATCTTATAATGTCGACGGCCTACGACGTTCCAAACGCAGGCATGTACAGCCAGAGCGTTACGTTGGCTGCGAAGTTAAAGAGTTGGATGTTGGTACCTTTAGAAACATGCCACCTGTCAGGATAGAAACATCCAAAGCAGTAGTAGATGAAATGTCATTGCCGTTATCATTCTTGTTCCGTTTGCCGCAGAGCAGTCCGGAAAAGGGTGCCGACAAATGTCAGAAGGCCAACAAACCAAATGCTTGTCGGGAGCTTCTGGTGTATAATAGGAGGGCAAAAACCCAAGAGGGGAAGAAGACTTGTGGCGATGTTGATCAAAAGGTACATAAAAATTCACTTGCTATCATTCCTCTTCCTGATCAAGATGCTGATCCAATAGCCGTTGAGCATTACGATCCAAACGGCAACGTTGCTAGAAGTCATGAACATCAATCACGTGATATTACTTCGCAGTATAGTCATTTGGTTAATAATCCTAAACCAATGAAAAACATCAATTTATTAGATGTTCCTGGAAAATCAGATGATGCTGAGAAGAACGACCATGTTTCTTCACGATGTCAATTTTTTGGCTCTACTAAGTTACAAAGGAAGAGTATAGGTGACTTGGATGATATCGATCTTGGAAATAGATGGGAAGGGATAAAAAGAAAATCGAAGACAGGATTTCATGAGGGAAAATATCGCTCAACTCATTTAAGAAATAATGGCGAAGGAAGAAGTCACAATTATAAAGACAGAACTTTAAATGCGGCTGCATACAAGAGTTTGATCCATTCATATTTACAGAATATTAATACAATACCGGTCATAGAAGAACCTCCTATCACTGACCAGTGGAAGAAATGTAACACAACAAACGGTGTTGGACAAAATGTGGAAACCAAGATTTCTCATGGAGAGGATGATGTAGAAAAAGCTGAAATAGATATGTTGTGGAAAGAACTTGAAGTGTCACTGGCATCGAGTTATTTTGATGACTCAGAGGTTTCAAATGCAATTGTTTTGGCCGAGCCAGAGAAAAACTTAGAAGAAGTTTGTGAACATGATAATAGATTGGATGAAGAAATTGGAATATACTGCTGTATATGTGGCTTTGTGACCACCCATATCAGAGATGTTAATCCAATTTTTGTTGAAAATTCAGTGTGGCGCCAAGAGGAGAAGCAGATTGATGGAGGAGAAGATAAAGAAGAGGCCACCAAGGATGATGAAGATGATGACTTCCATTTTTTCCCGACCGACACTTCTCGTGATGAACCGATATCGGAAGAAAACCAAAGCGTTTGGTCATTAATTCCTGAACTCAGAGAAAAATTGCATGTGCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCGAAACATTGCAGGGTCAACAAATCCAGGGCTAATTGAAGCCGAATCCAAAAAAAGAGGTGGCTGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACCTGAAGTTATTCCCGGGGAAGAGACCTCTAGTTCTTGCTCCAAAAACTACGCTCTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCGGTGTACTTGATTCATGGTCGTAGAACCTATAGGGTGTTCAAGCAGAATACAGTTGCTACTCTTCCTGGAGTTCCCAAGCCTACCGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATCCAAAAATGGCATTCGCATCCGAGTGTTCTAATCATGGGCTACACTTCGTTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACACCGAAAGTTTATGGCTCAAGTGTTGAGGGAAAGTCCTGGACTCTTGGTACTTGATGAAGGTCACAACCCTAGAAGTACCAAATCAAGGTTGCGAAAATGTTTGATGAAAGTGCAAACCGAATTGAGAATATTGCTTTCCGGTACTTTGTTTCAAAATAATTTCTGCGAATACTTCAACACTCTATGCTTGGCAAGACCGAAATTCCCTCACGAAGTGTTGAAAGCATTAGACCCTAAATACAAGAGGAAAAAGAAAGGAGTAGACCAAAAAGGAGCAGAAAAGGCGCAATATTTGATCGAGTCACGGGCAAGAAAATTCTTCTTAGATACAATTGCTAGGAAAATTGACTCTAATGTTGGAGAGGAAAGAATTCAAGGCTTAAACATGTTGAGAAATGTGACAAATGGTTTTATCGATGTTTATGAAGCTGGAAGTTCTGATGGTTTACCAGGTTTACAAATTTATACACTGCTAATGAATACAACCGATATACAGCATGAGATTCTGCAGAAACTTCACAGCGACATGTTTAAGTGCAGTGGATACCCTCTCGAGTTAGAGCTTTTGATAACACTTGGATCAATACATCCTTGGCTGGTCAAAACCGCGGTGTGTTCTCAGAAGTTTTTAACAAAGGAGCAATTGAGTGATCTTGATAAGTACAAGTTTGATTTGAAAATAGGTTCAAAAGTAAGATTTGTTTTGAGCCTTATCTATCGTGTTGTCAAGAACGAAAAGGTTCTTATCTTTTGCCACAACATTGCGCCTGTTCGCTTATTTCAAGAATATTTCGAGAAGTACTTTGGATGGCAAAAAGGCCGTGAAGTTTTAGTACTAACCGGGGAACTCGAGCTCTTTGAACGTGGGAAAATAATGGATAAATTTGAGGAGCCTGGTGGAGTATCAAAGATTCTACTTGCTTCAATCACAGCTTGTGCTGAAGGGATTAGTTTGACAGCTGCCTCTCGTGTGATCATGTTGGATTCAGAGTGGAACCCTTCTAAAACAAAGCAAGCTATTGCGCGAGCGTTTCGCCCCGGTCAGCAGAAAATGGTTTATGTTTATCAGCTCTTGGTGACAGGTTCGTTGGAGGAAGATAAGTACCGAAGAACCACTTGGAAAGAGTGGGTGTCGAGCATGATTTTCAGCGAGGCATTTGTCGAAGATCCTTCTCGTTGGCAAGCTGAGAAGATTGAAGATGATATTCTAAGGGAAATGGTCGAGGAGGATAAGTCTAAATCATTCCATATGATCATGAAGAATGAAAAGGCTTCAACAAAAACATAA 3918 0.4048 MSRKRRLNDSKNPFNSDPFEAVIFGSWHPVEFIKVKSGSMSIHFTDNHHMVMDKGTLSDIRIRSRKATVSDCSCFLRPGIDVCVLSPPKRANDSVGLNLEPVWADARISSIQRKPHGSECSCQFFVNFYVEQGSLGLEMRTLCKDVKVFGLNQIAILQKIEHSPGENQPHRWSSSEDSSSLPHTKLLLGKFLIDLSWLVVTSVVKNVSFCARSVENKMVYQILGGDSSNSSSSNTESHIDVIGFRTDDGMLVPIVSQVAITNTKRADHAHESRADEASSSYNVDGLRRSKRRHVQPERYVGCEVKELDVGTFRNMPPVRIETSKAVVDEMSLPLSFLFRLPQSSPEKGADKCQKANKPNACRELLVYNRRAKTQEGKKTCGDVDQKVHKNSLAIIPLPDQDADPIAVEHYDPNGNVARSHEHQSRDITSQYSHLVNNPKPMKNINLLDVPGKSDDAEKNDHVSSRCQFFGSTKLQRKSIGDLDDIDLGNRWEGIKRKSKTGFHEGKYRSTHLRNNGEGRSHNYKDRTLNAAAYKSLIHSYLQNINTIPVIEEPPITDQWKKCNTTNGVGQNVETKISHGEDDVEKAEIDMLWKELEVSLASSYFDDSEVSNAIVLAEPEKNLEEVCEHDNRLDEEIGIYCCICGFVTTHIRDVNPIFVENSVWRQEEKQIDGGEDKEEATKDDEDDDFHFFPTDTSRDEPISEENQSVWSLIPELREKLHVHQKKAFEFLWRNIAGSTNPGLIEAESKKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQNTVATLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKFMAQVLRESPGLLVLDEGHNPRSTKSRLRKCLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFPHEVLKALDPKYKRKKKGVDQKGAEKAQYLIESRARKFFLDTIARKIDSNVGEERIQGLNMLRNVTNGFIDVYEAGSSDGLPGLQIYTLLMNTTDIQHEILQKLHSDMFKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVRLFQEYFEKYFGWQKGREVLVLTGELELFERGKIMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMVEEDKSKSFHMIMKNEKASTKT* 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2856 1305 SMART helicmild6 1135 1224 IPR001650 -
Mtr5g2856 1305 Gene3D - 1030 1305 IPR027417 -
Mtr5g2856 1305 CDD SF2_C_SNF 1099 1235 - -
Mtr5g2856 1305 CDD DEXHc_ATRX-like 719 945 - -
Mtr5g2856 1305 MobiDBLite consensus disorder prediction 667 702 - -
Mtr5g2856 1305 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 744 944 IPR014001 -
Mtr5g2856 1305 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1303 IPR044567 GO:0080188
Mtr5g2856 1305 MobiDBLite consensus disorder prediction 683 701 - -
Mtr5g2856 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 955 IPR027417 -
Mtr5g2856 1305 Pfam SNF2-related domain 718 962 IPR000330 GO:0005524|GO:0140658
Mtr5g2856 1305 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1303 - -
Mtr5g2856 1305 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1110 1271 IPR001650 -
Mtr5g2856 1305 Gene3D - 692 987 IPR038718 -
Mtr5g2856 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1024 1287 IPR027417 -
Mtr5g2856 1305 SMART ultradead3 715 967 IPR014001 -
Mtr5g2856 1305 MobiDBLite consensus disorder prediction 263 288 - -
Mtr5g2856 1305 Pfam Helicase conserved C-terminal domain 1107 1223 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2856 Mtr-Chr5 37156275 37163901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2856 1103 1242 RAD5 or RAD16-like Gene Family AT5G43530 32.867 2.79e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr5g2856 SNF2_N 1e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2856 K10875 - gmx:100811703 1795.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2856 5 37156275 37163901 Mtr5g2856 5 37156275 37163901 ECH
Mtr3g2210 3 35742316 35747850 Mtr5g2856 5 37156275 37163901 PCT